Analysis done in R. Perez-Carrasco, C. Beentjes, R. Grima, Effects of cell cycle variability on lineage and population measurements of mRNA abundance. JRS Interface 17:168 (2020) to study the distribution of mRNA in a cell analyzing effects of cell cycle duration variability in a transcription model that takes into account bipartition, DNA replication, and a structured cell cycle.
- cyclo_2states.cpp source code to run trajectories (lineage) of an individual cell using the
langilclass - cyclo_2states_pop.cpp source code to run trajectories of a proliferating population of cells using the
langilclass and stores the final snapshot. - runcyclo.py python code defining functions to create input files and run
cyclo_2statesandcyclo_2states_pop - manuscriptfigures.py python code used to create the figures of the manuscript
- bursttrans.py definition of the analytical expressions for the factorial moments of the distribution of mRNAs