From 63d7092ac9e8b3d5578aef09dd0c619dff24c1f6 Mon Sep 17 00:00:00 2001 From: Kevin Sawade Date: Sun, 18 May 2025 18:11:07 +0200 Subject: [PATCH] Updated the README badges. --- README.md | 24 ++++++++++++++++++++++-- 1 file changed, 22 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 3695f2c..eff627e 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,16 @@ -[![Test](https://github.com/AG-Peter/encodermap/actions/workflows/unittests.yaml/badge.svg?branch=main)](https://ag-peter.github.io/encodermap/_static/html_test_runner_report.html) -[![badge](https://img.shields.io/endpoint?url=https://gist.githubusercontent.com/kevinsawade/e4969c0b8ce8edeb862af753cff43ad0/raw/test.json)](https://ag-peter.github.io/encodermap/_static/coverage/) +[![Test](https://img.shields.io/endpoint?url=https%3A%2F%2Fraw.githubusercontent.com%2FAG-Peter%2Fencodermap%2Frefs%2Fheads%2Fgh-pages%2Ftest_bade.json)](https://ag-peter.github.io/encodermap/_static/html_test_runner_report.html) +[![Coverage](https://img.shields.io/endpoint?url=https%3A%2F%2Fraw.githubusercontent.com%2FAG-Peter%2Fencodermap%2Frefs%2Fheads%2Fgh-pages%2Fcoverage_badge.json) +](https://ag-peter.github.io/encodermap/_static/coverage/index.html) +[![Docbuild](https://img.shields.io/endpoint?url=https%3A%2F%2Fraw.githubusercontent.com%2FAG-Peter%2Fencodermap%2Frefs%2Fheads%2Fgh-pages%2Fdocbuild_badge.json)](https://ag-peter.github.io/encodermap/) [![color](https://img.shields.io/badge/color-e77800-e77800)]() [![badge](https://img.shields.io/badge/License-LGPL_v3-blue.svg)](https://www.gnu.org/licenses/lgpl-3.0) [![badge](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) [![Imports: isort](https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336)](https://pycqa.github.io/isort/) [![Checked with mypy](https://www.mypy-lang.org/static/mypy_badge.svg)](https://mypy-lang.org/) +[![MadeWithLove](https://img.shields.io/endpoint?url=https://gist.githubusercontent.com/kevinsawade/bcd9d09bc682b4743b84fc6e967478ac/raw/endpoint.json)](https://www.chemie.uni-konstanz.de/ag-peter/) + @@ -130,3 +134,19 @@ If you have any questions you can have a look at the [FAQ](questions.md) (not ve publisher={ACS Publications} } ``` + +Since PyEMMA (https://github.com/markovmodel/PyEMMA) has been archived, EncoderMap incorporated some ideas of PyEMMA's featurization code. Find the citation here: + +``` +@article{scherer2015pyemma, + title={PyEMMA 2: A software package for estimation, validation, and analysis of Markov models}, + author={Scherer, Martin K and Trendelkamp-Schroer, Benjamin and Paul, Fabian and P{\'e}rez-Hern{\'a}ndez, Guillermo and Hoffmann, Moritz and Plattner, Nuria and Wehmeyer, Christoph and Prinz, Jan-Hendrik and No{\'e}, Frank}, + journal={Journal of chemical theory and computation}, + volume={11}, + number={11}, + pages={5525--5542}, + year={2015}, + publisher={ACS Publications} +} + +```