Situation: I run assnake result dada2-filter-and-trim --preset def -d $DNAME gather -j 50 --run
It returned the result I was not pleased with. I changed a preset and run again. Then, I realised, that assnake used not the original raw data, but a preprocessed one by the first run.
To my mind, it is not very obvious behaviour. But I am interested is there an option to use the original raw dataset (or maybe an option to outline a name of preprocessed version of dataset (a folder name), for example :
raw, or raw__dada2fat_def.fbe5687 or raw__dada2fat_def.fbe5687__dada2fat_manual
Situation: I run
assnake result dada2-filter-and-trim --preset def -d $DNAME gather -j 50 --runIt returned the result I was not pleased with. I changed a preset and run again. Then, I realised, that assnake used not the original raw data, but a preprocessed one by the first run.
To my mind, it is not very obvious behaviour. But I am interested is there an option to use the original raw dataset (or maybe an option to outline a name of preprocessed version of dataset (a folder name), for example :
raw, orraw__dada2fat_def.fbe5687orraw__dada2fat_def.fbe5687__dada2fat_manual