Get the ground-truth annotation for the LARRY dataset (Fig. 4c)

[ShouWenWang]

If you are interested to get the the annotation as in Fig. 4c, you can download cospar, and run adata_orig=cs.datasets.hematopoiesis(), you will get the latest LARRY dataset, and it will include many fields
particularly, adata.obs[''NeuMon_fate_bias''] is what you want. It will tell you the fate bias of each cell.

[Feanor007]

Hi Dr. Wang,

Thanks for this great work and sharing the dataset. After downloading the dataset using cs.datasets.hematopoiesis(), I noticed that the number of cells is fewer than the number of cells in here. Did you filter out some of the cells based on certain criteria?

[ShouWenWang]

you may use
cs.datasets.hematopoiesis_130K() to get all the data. cs.datasets.hematopoiesis() only contains cells with LARRY barcodes.