qqplot/qqplot.json at master · AnalysisCommons/qqplot · GitHub

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{
  "document_name": "Analysis Common App: qqplot",
  "app_name": "app_qqplot.json",
  "maintainer": "",
  "maintainer_email": "",
  "location": "Common_Tools/",
  "summary": "",
  "tags": [""],
  "version": "",
  "introSpec": {
	  "app_purpose": "",
	  "app_use_cases": "",
	  "app_requirements": "",
	  "app_output": "",
	  "app_how_does_it_work": ""
	},
  "inputSpec": [
    {
      "common": [
        {
          "name": "datafile",
          "class": "array:file",
          "label": "",
          "optional": "False",
          "details": ""
        },
        {
          "name": "label",
          "class": "string",
          "label": "Label",
          "optional": "False",
          "details": ""
        },
        {
          "name": "output_type",
          "class": "string",
          "label": "The filetype of the output plot. Must choose 'png', 'tiff', or 'pdf'",
          "optional": "False",
          "details": ""
        },
        {
          "name": "p_col",
          "class": "string",
          "label": "P-value column name. Must be the same if plotting multiple datasets (e.g. merging chromosomes)",
          "optional": "False",
          "details": ""
        },
        {
          "name": "filter",
          "class": "string",
          "label": "String: The threshold to apply to the filtering column. Eg. 'maf>0.05' or 'MAC>7'",
          "optional": "False",
          "details": ""
        },
        {
          "name": "use_gc_lambda",
          "class": "boolean",
          "label": "Print the GC Lambda value",
          "optional": "False",
          "details": ""
        },
        {
          "name": "include_ci",
          "class": "boolean",
          "label": "Include the confidence interval in this plot?",
          "optional": "False",
          "details": ""
        },
        {
          "name": "qq_color",
          "class": "array:string",
          "label": "The color of points in the QQ plot.",
          "optional": "False",
          "details": ""
        },
        {
          "name": "qq_color_criteria",
          "class": "string",
          "label": "Color filtering criteria: Color all points identified by a given criterion (eg. 'maf<0.05') with a specified color. Multiple criteria may be used as long as you give an equal amount of color names in the parameter above.",
          "optional": "False",
          "details": ""
        },
        {
          "name": "highlight ",
          "class": "array:string",
          "label": "Highlighted Areas: A list of names from your 'gene' column to highlight, for example 'gene1,gene2,gene3'",
          "optional": "False",
          "details": ""
        },
      ]
    },
    {
      "advanced": [
	    {
          "name": "",
		  "class": "",
		  "label": "",
		  "optional": "False",
		  "details": ""
	    }
	  ]
    }
  ],
  "outputSpec": [
    {
    {
      "name": "qqplot",
	  "class": "array:file",
	  "label": "",
	  "details": ""
    }
  ],
  "runSpec": {
    "details": ""
  },
  "cmdLineSpec": {
    "details": ""
  }
}