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Bloom 2015 approach to mapping #19

@Thatguy027

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@Thatguy027

Approach as I understand it:

  1. Generate 6 kinship matrices built using all but one excluded chromosome (e.g. mapK_I = CHROM II, III, IV, V, X)
  2. Calculate BLUPs using each kinship matrix
  3. Subtract BLUPs from phenotype
  4. Map by simple correlation

For mapK_I:
cor(Y - Y.BLUP ~ marker)$p.value
For all markers on chromosome I

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