makefile fails

[eastreen]

I've been trying to install the latest SOAPnuke, but I'm running into this error

SOAPnuke-SOAPnuke2.1.9$ make
"GCC version Passes, 13 >= 4.7"
"Warning: ZLIB version  is lower than 1.2.3.5."
Makefile:39:  -lz -lpthread -labc 
g++ -std=c++11 -g -O3 -c src/BloomFilter.cpp -o obj/BloomFilter.o
g++ -std=c++11 -g -O3 -c src/gc.cpp -o obj/gc.o
In file included from src/gc.cpp:18:
src/gc.h:23:37: error: ‘uint64_t’ was not declared in this scope
   23 | quartile_result cal_quar_from_array(uint64_t data[], int len);
      |                                     ^~~~~~~~
src/gc.h:12:1: note: ‘uint64_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
   11 | #include <math.h>
  +++ |+#include <cstdint>
   12 | using namespace ::std;
src/gc.h:23:54: error: expected primary-expression before ‘int’
   23 | quartile_result cal_quar_from_array(uint64_t data[], int len);
      |                                                      ^~~
src/gc.cpp:68:17: error: redefinition of ‘quartile_result cal_quar_from_array’
   68 | quartile_result cal_quar_from_array(uint64_t data[], int len)
      |                 ^~~~~~~~~~~~~~~~~~~
src/gc.h:23:17: note: ‘quartile_result cal_quar_from_array’ previously declared here
   23 | quartile_result cal_quar_from_array(uint64_t data[], int len);
      |                 ^~~~~~~~~~~~~~~~~~~
src/gc.cpp:68:37: error: ‘uint64_t’ was not declared in this scope
   68 | quartile_result cal_quar_from_array(uint64_t data[], int len)
      |                                     ^~~~~~~~
src/gc.cpp:19:1: note: ‘uint64_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’?
   18 | #include "gc.h"
  +++ |+#include <cstdint>
   19 | // #include<stdio.h>
src/gc.cpp:68:54: error: expected primary-expression before ‘int’
   68 | quartile_result cal_quar_from_array(uint64_t data[], int len)
      |                                                      ^~~
make: *** [Makefile:54: obj/gc.o] Error 1

The log states, that my zlib is of an older version, but I checked, and zlib is the latest version:

$ dpkg -s zlib1g | grep Version
Version: 1:1.3.dfsg-3.1ubuntu2.1

[eastreen]

Alright, I tried to troubleshoot on my own a bit. I added to the header of each src/*.h file a line #include <cstdint> and makefile seems to finally compile. Even though not without warnings:

"GCC version Passes, 13 >= 4.7"
"Warning: ZLIB version  is lower than 1.2.3.5."
Makefile:39:  -lz -lpthread -labc 
g++ -std=c++11 -g -O3 -c src/BloomFilter.cpp -o obj/BloomFilter.o
g++ -std=c++11 -g -O3 -c src/gc.cpp -o obj/gc.o
g++ -std=c++11 -g -O3 -c src/global_variable.cpp -o obj/global_variable.o
g++ -std=c++11 -g -O3 -c src/main.cpp -o obj/main.o
g++ -std=c++11 -g -O3 -c src/peprocess.cpp -o obj/peprocess.o
src/peprocess.cpp: In member function ‘void* peProcess::smallFilesProcess()’:
src/peprocess.cpp:2745:31: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2745 |                         system(rm_cmd.c_str());
      |                         ~~~~~~^~~~~~~~~~~~~~~~
src/peprocess.cpp:2750:31: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2750 |                         system(rm_cmd.c_str());
      |                         ~~~~~~^~~~~~~~~~~~~~~~
src/peprocess.cpp:2761:31: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2761 |                         system(rm_cmd.c_str());
      |                         ~~~~~~^~~~~~~~~~~~~~~~
src/peprocess.cpp:2766:31: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2766 |                         system(rm_cmd.c_str());
      |                         ~~~~~~^~~~~~~~~~~~~~~~
g++ -std=c++11 -g -O3 -c src/process_argv.cpp -o obj/process_argv.o
g++ -std=c++11 -g -O3 -c src/processStLFR.cpp -o obj/processStLFR.o
g++ -std=c++11 -g -O3 -c src/read_filter.cpp -o obj/read_filter.o
g++ -std=c++11 -g -O3 -c src/ReverseBloomFilter.cpp -o obj/ReverseBloomFilter.o
g++ -std=c++11 -g -O3 -c src/rmdup.cpp -o obj/rmdup.o
g++ -std=c++11 -g -O3 -c src/seprocess.cpp -o obj/seprocess.o
src/seprocess.cpp: In member function ‘void* seProcess::smallFilesProcess()’:
src/seprocess.cpp:1367:31: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1367 |                         system(rm_cmd.c_str());
      |                         ~~~~~~^~~~~~~~~~~~~~~~
src/seprocess.cpp:1377:31: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1377 |                         system(rm_cmd.c_str());
      |                         ~~~~~~^~~~~~~~~~~~~~~~
g++ -std=c++11 -g -O3 -c src/sequence.cpp -o obj/sequence.o
g++ ./obj/BloomFilter.o ./obj/gc.o ./obj/global_variable.o ./obj/main.o ./obj/peprocess.o ./obj/process_argv.o ./obj/processStLFR.o ./obj/read_filter.o ./obj/ReverseBloomFilter.o ./obj/rmdup.o ./obj/seprocess.o ./obj/sequence.o -o SOAPnuke -lz -lpthread

If there is a more optimal way to fix this, please, let me know