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Hello,
Thank you very much for releasing RegFormer.
I am currently trying to run the regformer_emb.py benchmark on my own scRNA-seq dataset.
However, I found that the repository does not include the following required files:
vocab.json (the gene token vocabulary that matches the GRN graph)
pt_graph_sort_avg_pool_all_length (the pretrained checkpoint used in the tutorials)
I already have the graph file (output_graph_no_cycles.dgl), but without the matching vocab and checkpoint it is not possible to run the embedding scripts.
Would you be able to share:
the vocab.json corresponding to your released graph
the pretrained checkpoint used in the tutorial (pt_graph_sort_avg_pool_all_length)
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