Problem with readGMAP

[ruthfa]

Hi, I have a problem when I try to load the gmap file.
cluster.align <- readGMAP("rna-new.gff3",raw.cluster, recluster=TRUE, recluster.identity = 0.7,recluster.coverage = 0.7)
It returns:

Error in $<-.data.frame(*tmp*, "sameCluster", value = 0) :
replacement has 1 row, data has 0

I don't know exactly what is happening
Thanks in advance
Ruth Freire

[BMILAB]

Hi, I have a problem when I try to load the gmap file.
cluster.align <- readGMAP("rna-new.gff3",raw.cluster, recluster=TRUE, recluster.identity = 0.7,recluster.coverage = 0.7)
It returns:

Error in $<-.data.frame(*tmp*, "sameCluster", value = 0) :
replacement has 1 row, data has 0

I don't know exactly what is happening
Thanks in advance
Ruth Freire

Hi Ruth,

Thank you for your contacting, and sorry for late reply. I think this is due to the different GMAP version. Please refer to https://github.com/BMILAB/AStrap/issues/5. Please let me know if you have any questions. or you can share you gmap data to me if you donn't mind.