Samtools variant calling is not working anymore with samtools 1.1
[bam_rmdup_core] processing reference 16...
Samtools-htslib-API: bam_get_library() not yet implemented
/apps/gi/ngsane/devel_db//mods/samSNPs.sh: line 97: 1358176 Aborted samtools rmdup $f $OUTDIR/${n/bam/drm.bam}
This is a known issue with samtools 1.1 (samtools/samtools#291)
Samtools variant calling is not working anymore with samtools 1.1
[bam_rmdup_core] processing reference 16... Samtools-htslib-API: bam_get_library() not yet implemented /apps/gi/ngsane/devel_db//mods/samSNPs.sh: line 97: 1358176 Aborted samtools rmdup $f $OUTDIR/${n/bam/drm.bam}This is a known issue with samtools 1.1 (samtools/samtools#291)