JOSS paper

[orbeckst]

Write a short software paper on GromacsWrapper for JOSS.

• Author instructions – create a repo and then submit, ~1000 words, see examples
• authors?
  • any contributor (name on a commit)
  • must edit and ok paper
  • willing to help with revisions (paper/code/docs)

[richardjgowers]

I'd be interested in this. I'm going to try and get coverage higher (and find any easy bugs)

[orbeckst]

The more coverage the more Unicode issues raise their head.... So yes, more tests would be super!

…

-- Oliver Beckstein email: orbeckst@gmail.com

Am Aug 11, 2018 um 13:43 schrieb Richard Gowers ***@***.***>: I'd be interested in this. I'm going to try and get coverage higher (and find any easy bugs) — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub, or mute the thread.

[orbeckst]

@pslacerda @jandom @kain88-de @dotsdl @whitead @richardjgowers @ianmkenney @AndySomogyi @PicoCentauri @mohebifar – thank you for contributing to GromacsWrapper. I'd like to write a short Journal of Open Source Software paper. If you are interested in being an author on this mini-paper then please reply on this issue.

At a minimum, you will need to read the draft of the paper, make corrections if necessary, and ok it. I would also expect willingness in helping to respond to referees' requests for revisions.

I will create a repo for the paper and invite everyone who wants to be an author. Anyone who does not want to be an author will be acknowledged in the acknowledgements (unless they do not want to be mentioned at all).

The top of this issue has links to JOSS and the author instructions.

— @orbeckst

Oliver Beckstein, DPhil * @orbeckst
https://becksteinlab.physics.asu.edu/

Associate Professor of Physics
Arizona State University
Center for Biological Physics and Department of Physics
Tempe, AZ 85287-1504
USA

Department of Physics: https://physics.asu.edu/content/oliver-beckstein
Center for Biological Physics: https://cbp.asu.edu/content/oliver-beckstein

[AndySomogyi]

Hi Oliver. I not sure I’ve contributed a huge amount, but I’d very much like to help in writing and editing a paper. Let me know what you’d like me to do.

…

Sent from my iPhone

On Aug 16, 2018, at 9:39 PM, Oliver Beckstein ***@***.***> wrote: @pslacerda @jandom @kain88-de @dotsdl @whitead @richardjgowers @ianmkenney @AndySomogyi @PicoCentauri @mohebifar – thank you for contributing to GromacsWrapper. I'd like to write a short Journal of Open Source Software paper. If you are interested in being an author on this mini-paper then please reply on this issue. At a minimum, you will need to read the draft of the paper, make corrections if necessary, and ok it. I would also expect willingness in helping to respond to referees' requests for revisions. I will create a repo for the paper and invite everyone who wants to be an author. Anyone who does not want to be an author will be acknowledged in the acknowledgements (unless they do not want to be mentioned at all). The top of this issue has links to JOSS and the author instructions. — @orbeckst Oliver Beckstein, DPhil * @orbeckst https://becksteinlab.physics.asu.edu/ Associate Professor of Physics Arizona State University Center for Biological Physics and Department of Physics Tempe, AZ 85287-1504 USA Department of Physics: https://physics.asu.edu/content/oliver-beckstein Center for Biological Physics: https://cbp.asu.edu/content/oliver-beckstein — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

[PicoCentauri]

Following @AndySomogyi I would also be happy if I can contribute anything to the paper!

[pslacerda]

Of course I want!

I'm had almost forgot about MD but in the last months I did some modelling and I very want to do more (and submit the JOSS paper).

If you have Telegram would be nice to chat there (I can create a group) and my email is the one I sign the commits.

[orbeckst]

If you have Telegram would be nice to chat there (I can create a group) and my email is the one I sign the commits.

I think we can just use the issue tracker for discussion, then everything is in one place. Use this thread for general discussion, open new issues for anything specific and reference #147 in the new issues in order to link them back to this master issue.

[orbeckst]

I opened PR #158 with a stub for the paper. Please add your author meta data. I assume that you can leave anything empty that you do not want to provide.

[orbeckst]

Anyone else who wants to be an author on the paper should just announce it in this thread – there's no cut-off until it is submitted.

[jandom]

Yup, i'm on board!

[ianmkenney]

I'll contribute to the paper