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Simplification: no learnr tutorials or Shiny app, only init()
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‎.Rbuildignore‎

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^appveyor\.yml$
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^\.Rproj\.user$
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^.*\.Rproj$
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LICENSE
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data-raw
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data-raw/*
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Untitled
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Untitled/*
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LICENSE.md

‎.gitignore‎

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# RSconnect
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/inst/shiny/**/rsconnect/*
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/inst/shiny/**/**/rsconnect/*
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/inst/shiny/**/**/rsconnect/*

‎DESCRIPTION‎

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Package: BioDataScience
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Type: Package
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Version: 2020.0.9002
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Version: 2020.0.0
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Title: A Series of Learnr Documents for Biological Data Science
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Description: Interactive documents using learnr for studying biological data science.
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Authors@R: c(
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email = "guyliann.engels@umons.ac.be"))
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Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
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Depends: R (>= 3.3.0)
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Imports: learnr, httr, jsonlite, remotes, svMisc, mongolite (>= 1.5)
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Suggests: SciViews, ggplot2, ggpubr, data.io, flow, chart, covr, knitr, testthat
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License: CC BY-SA 4.0
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Suggests: covr, knitr, testthat
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License: MIT + file LICENSE
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Encoding: UTF-8
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LazyData: true
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URL: https://github.com/BioDataScience-Course/BioDataScience

‎LICENSE‎

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YEAR: 2020
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COPYRIGHT HOLDER: Philippe Grosjean

‎LICENSE.md‎

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# MIT License
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Copyright (c) 2020 Philippe Grosjean
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.

‎NAMESPACE‎

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# Generated by roxygen2: do not edit by hand
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export(checker_sdd)
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export(init)
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export(record_sdd)
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export(run)
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export(send_mail_sdd)
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export(user_email)
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export(user_name)
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importFrom(httr,GET)
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importFrom(httr,authenticate)
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importFrom(httr,content)
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importFrom(httr,parse_url)
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importFrom(httr,status_code)
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importFrom(jsonlite,base64_dec)
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importFrom(jsonlite,base64_enc)
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importFrom(jsonlite,fromJSON)
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importFrom(learnr,run_tutorial)
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importFrom(mongolite,mongo)
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importFrom(remotes,install_github)
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importFrom(svMisc,list_to_json)
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importFrom(utils,compareVersion)
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importFrom(utils,create.post)
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importFrom(utils,packageVersion)
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importFrom(utils,select.list)

‎NEWS.md‎

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# BioDataScience 2020.0.0
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- Clean up finished. Most code moved to learndown. Learnr tutorials and Shiny
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applications moved to BioDataScience1.
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# BioDataScience 2020.0.9002
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- Add `MONGO_URL_SERVER` environmlent variable in `init()`.
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# BioDataScience 2020.0.9001
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- Separate `MONGO_USER` and `MONGO_PASSWORD` variables in `init()` and do not set them if already there.
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- Separate `MONGO_USER` and `MONGO_PASSWORD` variables in `init()` and do not
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set them if already there.
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# BioDataScience 2020.0.9000
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‎R/BioDataScience-package.R‎

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#' A Series of Learnr Documents for BioDataScience
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#' Base configuration for BioDataScience
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#'
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#' Material for the course.
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#'
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#' @section Important functions:
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#'
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#' - [run()] is the main function to launch learnr interactive documents
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#' Configure the R environment for the BioDartaScience course using [init()].
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#'
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#' @docType package
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#' @name BioDataScience-package
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#'
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#' @importFrom learnr run_tutorial
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#' @importFrom httr content status_code parse_url authenticate GET
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#' @importFrom jsonlite fromJSON base64_dec base64_enc
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#' @importFrom utils compareVersion packageVersion select.list create.post
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#' @importFrom remotes install_github
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#' @importFrom svMisc list_to_json
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#' @importFrom mongolite mongo
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NULL

‎R/checker_sdd.R‎

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‎R/data.R‎

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