Remove Code that Generates Point Exclusions File for Old Pipeline (Once we Retire Old Pipeline)

[PatrickTCorbett]

Part of "utils/Rt_review_exclusions.R" is dedicated to creating a point exclusions outlier csv file for the old pipeline (as opposed to manually typing in the point exclusions). See below for code segment.

When we retire the old pipeline we should make sure to delete this segment as well as it will no longer serve a purpose

`

Temp old-pipeline csv generator#####

# Save a version in temp folder.
# Need to copy and paste this in current blank outlier csv file
point_exclusions <- combined_df |>
  dplyr::filter(!is.na(drop_dates)) |>
  dplyr::mutate(
    raw_confirm = NA,
    clean_confirm = NA
  ) |>
  dplyr::select(
    reference_date,
    report_date,
    "geo_value",
    "pathogen"
  ) |>
  dplyr::mutate(
    geo_value = tolower(geo_value),
    pathogen = dplyr::case_when(pathogen == "Influenza" ~ "flu",
      pathogen == "COVID-19" ~ "covid",
      .default = as.character(pathogen)
    )
  )

message(paste0(
  "saving ",
  paste0(lubridate::ymd(report_date), ".csv"),
  " in ", containter_name,
  "/temp_outliers_for_old"
))
AzureStor::storage_write_csv(
  cont = cont,
  object = point_exclusions,
  file = file.path(
    "temp_outliers_for_old",
    paste0(lubridate::ymd(report_date), ".csv")
  )
)

`

[athowes]

@PatrickTCorbett any blockers on addressing this?