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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<link rel="shortcut icon" type="image/ico" href="img/favicon.ico"/>
<meta name="title" content="CaseOLAP">
<meta itemprop="name" content="CaseOLAP">
<meta property="og:title" content="CaseOLAP">
<meta name="description"
content="CaseOLAP">
<meta itemprop="description"
content="CaseOLAP">
<meta id="meta-tag-description" property="og:description"
content="CaseOLAP">
<title>CaseOLAP</title>
<meta itemprop="image"
content="https://avatars3.githubusercontent.com/u/41661812?s=400&u=094ffc3c6cfe28f1908dfe1c0eca1602abe7219b&v=4">
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content="https://avatars3.githubusercontent.com/u/41661812?s=400&u=094ffc3c6cfe28f1908dfe1c0eca1602abe7219b&v=4">
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.6/css/bootstrap.min.css"
integrity="sha384-1q8mTJOASx8j1Au+a5WDVnPi2lkFfwwEAa8hDDdjZlpLegxhjVME1fgjWPGmkzs7" crossorigin="anonymous">
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integrity="sha384-fLW2N01lMqjakBkx3l/M9EahuwpSfeNvV63J5ezn3uZzapT0u7EYsXMjQV+0En5r" crossorigin="anonymous">
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.5.0/css/font-awesome.min.css">
<link href="css/stylesheet.css" rel="stylesheet">
<link href="css/project.css" rel="stylesheet">
<link href="css/profile.css" rel="stylesheet">
<link href="css/academic.css" rel="stylesheet">
<link href="css/timeline.css" rel="stylesheet">
</head>
<body>
<nav id="navigationBar" class="navbar navbar-inverse navbar-fixed-top">
<div class="container-fluid">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse"
data-target="#bs-example-navbar-collapse-1" aria-expanded="false">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="#landingPage" style="color:white">CaseOLAP</a>
</div>
<div class="collapse navbar-collapse" id="bs-example-navbar-collapse-1">
<ul class="nav navbar-nav navbar-right">
<li><a href="#aboutUs">About CaseOLAP</a></li>
<li><a href="#trainingSyllabus">Workflow</a></li>
<li><a href="#academics">Projects</a></li>
<li><a href="#extraCurriculars">Activities</a></li>
</ul>
</div>
</div>
</nav>
<div class="container-table" id="landingPage">
<div class="effect1"></div>
<div class="container-fluid valign">
<div class="row text-center">
<div class="col-md-4" style="float:none; margin:auto;">
<div class="card hovercard jVCenter">
<div class="cardheader"></div>
<div class="avatar">
<img alt="" src="img/caseolap.png">
</div>
<div class="info">
<div class="title">
<h2><a target="_blank" href="http://caseolap.github.io">CaseOLAP</a></h2>
</div>
<div class="desc"> A Cutting Age Phrase Mining Platform </div>
<div class="desc"> <h5> @ Heart BD2K, UCLA </h5> </div>
</div>
<div class="bottom">
<a class="btn btn-default btn-sm" href="https://github.com/CaseOLAP/caseolap">
<i class="fa fa-github"></i>
</a>
</div>
</div>
</div>
</div>
</div>
</div>
<!--About Us -->
<div id="aboutUs">
<div class="container">
<div class="row">
<div class="page-header"><h1>CaseOLAP Platform </h1></div>
<div class="col-md-7">
<p>
We are greatly excited with the new enthusiasm to introduce the Context-aware Semantic Online Analytical Processing pipeline (CaseOLAP), developed in 2016. The rapidly accumulating quantity of biomedical textual data has far exceeded the human capacity of manual curation and analysis, necessitating novel text-mining tools to extract biological insights from large volumes of scientific reports.CaseOLAP successfully quantifies user-defined phrase-category relationships through analysis of textual data.
</p>
<p>
We have developed a protocol for the complete CaseOLAP platform, including data preprocessing (i.e., downloading and parsing text documents), indexing and searching with Elasticsearch, creating a functional document structure called Text-Cube and quantifying phrase-category relationships using the core CaseOLAP algorithm.
</p>
<p>
Data preprocessing generates key-value pairs for all documents involved. As an example, a key may refer to the document PMID, while a value may refer to different document metadata. Preprocessed data is rearranged by indexing and searching for an entity count, which further facilitates the CaseOLAP score calculation. Obtained raw CaseOLAP results can be taken to integrative analysis including dimensionality reduction, clustering, temporal and geographical analysis, as well as the creation of a graphical database which enables semantic mapping of the documents .
</p>
<p>
CaseOLAP defines phrase-category relationships in an accurate (pinpoints relationships), consistent (highly reproducible), and efficient manner (processes 100,000 words/sec). Following our protocol, one can build up a cloud-computing environment supporting CaseOLAP which offers enhanced accessibility and affords grand opportunities to empower the biomedical community with phrase-mining tools for widespread research applications.
<p>
</div>
<div class="col-md-4 col-md-offset-1">
<h2> Applications </h2>
<ul>
<li> <a href="https://caseolap.github.io/mesh2pmid-mapping/" target="_blank"> MeSH to PMID Mapping </a> </li>
<li> <a href="meshtrees/index.html" target="_blank"> Exploration of MeSH Trees </a></li>
<li> <a href="https://caseolap.github.io/cvd-sunburst/" target="_blank"> CVD Mesh Count </a> </li>
<li> <a href="association/index.html" target="_blank"> Discovering Protein-Disease Attribution </a> </li>
<li> <a href="https://caseolap.github.io/dataviz/" target="_blank"> Sample CaseOLAP score visualization </a> </li>
<li> <a href="graph/index.html" target="_blank"> Sample of co-occurance based graph </a> </li>
<li> <a href="https://caseolap.github.io/reactom-web-api/" target="_blank"> Reactom API </a> </li>
<li> Discovering Drug-Disease Association </li>
<li> Temporal Analysis of Scientific Innovation </li>
<li> Geographical Distribution</a></li>
<li> Phrase Based Summarization </li>
<li> Search of Biomarker panel </li>
<li> Semantic Mapping of Documents </a> </li>
</ul>
</div>
</div>
</div>
</div>
<!--Training Syllabus -->
<div id="trainingSyllabus">
<div style="padding:50px">
<div class="container" style="background-color:rgba(255, 255, 255, 0.5)">
<div class="page-header">
<h1> CaseOLAP Workflow </h1>
</div>
<ul class="timeline" data-bind="template: { name: 'trainSyl-template', foreach: trainSyl }"></ul>
</div>
</div>
</div>
<!--Projects -->
<div id="academics">
<div class="effect1" style="background-color:rgba(50,50,50,0.2)"></div>
<div style="position:relative; padding:50px">
<div class="container-fluid">
<div class="page-header">
<h1> Sample Implementation and Results </h1>
</div>
<div id="trainingProject" class="row row-eq-height"
data-bind="template: { name: 'trainingProject-template', foreach: trainingProject }"></div>
<div class="row row-eq-height">
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data-bind="template: {name: 'academics-template', data: {array: service, header: 'Achievements', image: 'fa fa-trophy'}}">
</div>
</div>
</div>
</div>
</div>
<!--Extra curriculars-->
<div id="extraCurriculars">
<div class="container-fluid">
<div class="row">
<div class="page-header"><h1>Research and Activities</h1></div>
<div class="col-md-5 col-md-offset-1" id="activities">
<h2> Internship Projects </h2>
<ul data-bind="foreach: activities">
<li data-bind="html: $data">Loading...</li>
</ul>
</div>
<div class="col-md-5" id="achievements">
<h2> Talk and Publications </h2>
<ul data-bind="foreach: achievements">
<li data-bind="html: $data">Loading...</li>
</ul>
</div>
</div>
</div>
</div>
<!--Foot notes-->
<div class="container-fluid" style="background:black; color:white !important;">
<div class="row text-center" style="padding-top:10px">
<div class="col-sm-3 col-xs-6">
<p><span class="glyphicon glyphicon-earphone"></span> Phone</p>
<p style="margin-bottom:2px;">+1 (610)-555-5555</p>
</div>
<div class="col-sm-3 col-xs-6">
<p><span class="glyphicon glyphicon-home"></span> Location</p>
<p style="margin-bottom:2px;"> BD2K, UCLA</p>
</div>
<div class="col-sm-3 col-xs-6">
<p><span class="glyphicon glyphicon-send"></span> E-mail</p>
<p style="margin-bottom:2px;">example@g.ucla.edu</p>
</div>
<div class="col-sm-3 col-xs-6">
<p><span class="glyphicon glyphicon-leaf"> Web</p>
<p style="margin-bottom:2px;"><a href="http://caseolap.github.io">http://caseolap.github.io</a></p>
</div>
</div>
</div>
<!--Supporting templets-->
<script id="trainSyl-template" type="text/html">
<li data-bind="css: $index()%2==0 ? '' : 'timeline-inverted'">
<a class="btn btn-warning timeline-badge"><i
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<div class="timeline-panel">
<div class="timeline-heading">
<p data-bind="text:title" style="display:inline; font-weight:900"></p>,
<p style="display:inline; font-weight:700" data-bind="html: programes"></p>
<p>
<small class="text-muted"><!--ko text: startDate--><!--/ko--> - <!--ko text: endDate--><!--/ko--> —
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<div class="timeline-body">
<p data-bind="html: Desc"></p>
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</li>
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<script id="trainingProject-template" type="text/html">
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<div class="info">
<h3 class="title" data-bind="text: ptitle"></h3>
<p style="margin-top:0px" data-bind="text:datasource"></p>
<p class="institution" data-bind="text:public"></p>
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</div>
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</script>
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<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
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</body>
</html>