PubTator uses text mining to tag PubMed abstracts with standardized concepts. This repository retrieves and processes PubTator annotations for use in greenelab/snorkeling and elsewhere.
Install the conda environment specified in environment.yml by running:
conda env create --file environment.ymlActivate with source activate pubtator.
This repository is dual licensed as BSD 3-Clause and CC0 1.0, meaning any repository content can be used under either license. This licensing arrangement ensures source code is available under an OSI-approved License, while non-code content — such as figures, data, and documentation — is maximally reusable under a public domain dedication.