I found that when I'd installed ringity in Python 3.12 with pip install ringity but also had installed zarr and anndata with normal pip install, I was getting issues. However I found that if I specifically invoked pip install anndata==0.12.0rc4, then all my problems were solved. Seems like there is some deprecation with zarr and anndata dependency versions that will only be fixed once this 0.12.0rc4 anndata release goes fully live. I can try and replicate this error and more formally document it, but figured I'd add this before I forgot.
I found that when I'd installed ringity in Python 3.12 with
pip install ringitybut also had installedzarrandanndatawith normalpip install, I was getting issues. However I found that if I specifically invokedpip install anndata==0.12.0rc4, then all my problems were solved. Seems like there is some deprecation with zarr and anndata dependency versions that will only be fixed once this 0.12.0rc4 anndata release goes fully live. I can try and replicate this error and more formally document it, but figured I'd add this before I forgot.