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For example, if you use the system version of python on the HPC, you can't install into the site-packages directory, you have to install into some user PREFIX directory. This causes the ctools entry point to fail with the following error:
File "/home/rw690/site-packages/bin/ctools", line 11, in <module>
load_entry_point('chromatin==0.1.0', 'console_scripts', 'ctools')()
File "/usr/local/software/anaconda/3.2019-10/lib/python3.7/site-packages/pkg_resources/__init__.py", line 489, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File "/usr/local/software/anaconda/3.2019-10/lib/python3.7/site-packages/pkg_resources/__init__.py", line 2851, in load_entry_point
raise ImportError("Entry point %r not found" % ((group, name),))
ImportError: Entry point ('console_scripts', 'ctools') not found
Strangely, opening the python console and doing import chromatin.ctools works just fine. So clearly there is some other issue here.
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