From 1ba12bcc848e95269cdd119fa2ea3d71720169fb Mon Sep 17 00:00:00 2001 From: bpinsard Date: Wed, 20 Aug 2025 12:57:21 -0400 Subject: [PATCH] add CNeuroMod dataset --- README.md | 60 ++++++++++++++++++++++++++++++++++--------------------- 1 file changed, 37 insertions(+), 23 deletions(-) diff --git a/README.md b/README.md index ae50eb1..6555e9b 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * MRI/fMRI/Behavioral assessments/Endocrine procedures * The participant underwent daily testing for 30 consecutive days * Siemens 3T Prisma -* MRI data, code, and daily behavioral assessments will be publicly accessible upon publication. +* MRI data, code, and daily behavioral assessments will be publicly accessible upon publication. * https://doi.org/10.1101/866913 ### A densely sampled longitudinal dataset from healthy infants @@ -85,10 +85,10 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * N = 1 * male * 29-46 years old -* Data +* Data * multiple sites and with various scanner models * sMRI, rsfMRI, dMRI, ASL, ... - * scanned in 73 sessions at + * scanned in 73 sessions at * http://fcon_1000.projects.nitrc.org/indi/retro/SIMON.html ### Canadian subject dataset (Csub) @@ -98,7 +98,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * N = 1 * male * 42 years old -* Data +* Data * 13 sites, 3T Philips, Siemens and GE * sMRI, rsfMRI * 25 scanning sessions @@ -125,7 +125,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * 6 female, 2 males * 24-32 years old * Data - * 3T Siemens + * 3T Siemens * sMRI, rsfMRI, T2 Hippocampus, DTI, MRS * **11-50 scans** * Filevich, Elisa, et al. "Day2day: investigating daily variability of magnetic resonance imaging measures over half a year." BMC neuroscience 18.1 (2017): 65. @@ -164,7 +164,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * Male * 45 years old * Data - * 3T Siemens + * 3T Siemens * sMRI, rsfMRI, task fMRI, T2 * **104 scans** * Poldrack, Russell A., et al. "Long-term neural and physiological phenotyping of a single human." Nature communications 6 (2015): 8885. @@ -203,7 +203,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * 19 females, 15 males * 34-85 years old * Data - * 1.5T & 3T, GE & Siemens + * 1.5T & 3T, GE & Siemens * sMRI * 10-24 scans * Yang, Chung-Yi, et al. "Reproducibility of brain morphometry from short-term repeat clinical MRI examinations: a retrospective study." PloS one 11.1 (2016): e0146913. @@ -223,20 +223,20 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * Sites * Emory University * Harvard University - * University of Calgary + * University of Calgary * University of California Los Angeles (UCLA) - * University of California San Diego (UCSD) - * University of North Carolina Chapel Hill (UNC) - * Yale University + * University of California San Diego (UCSD) + * University of North Carolina Chapel Hill (UNC) + * Yale University * Zucker Hillside Hospital (ZHH) - + ### 8 healthy traveling subjects * ? * No download link * Subjects * N = 8 * Data - * 3T scanners/ 8 healthy adults acted as traveling phantoms, and were scanned twice at each of the four sites + * 3T scanners/ 8 healthy adults acted as traveling phantoms, and were scanned twice at each of the four sites * 1.5 T Siemens Sonata at UA, 3 T Siemens Trio at QU and UM, and 3 T Philips Intera at UBC * Long, Xiangyu, et al. "Sensorimotor network alterations in children and youth with prenatal alcohol exposure." Human brain mapping (2018). * Sites @@ -302,7 +302,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su ### Reproducibility of quantitative structural and physiological MRI measurements * Reproducibility of quantitative structural and physiological MRI measurements -* +* * Subjects * N = 25 * 5 females, 20 males @@ -319,7 +319,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * Subjects * N = 1 * Data - * plan to collect at least one structural image per month + * plan to collect at least one structural image per month * ref? ### Continuous scanning of the migraine cycle over 30 days @@ -350,7 +350,7 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * N = 4 * Data * Biosemi data in BDF format were recorded from 128 electrodes at 512 Hz. - + ### A dataset with T1 and multiple task fMRI * Single subject fMRI test–retest reliability metrics and confounding factors * https://www.sciencedirect.com/science/article/pii/S1053811912010890?via%3Dihub @@ -358,17 +358,17 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * N = 10, 50-58 years * 2 sessions, T1 and 4 tasks in each session * Data - * GE 1.5T + * GE 1.5T * T1 & task fMRI * two/three days apart * Gorgolewski, Krzysztof J., et al. "Single subject fMRI test–retest reliability metrics and confounding factors." Neuroimage 69 (2013): 231-243. ### Multi-parametric neuroimaging reproducibility * Multi-parametric neuroimaging reproducibility: A 3-T resource study -* Subject +* Subject * N = 21, 11M/10F * 22-61 years old -* Data +* Data * multiple paramatric scanning * T1, DTI, rs-fMRI, ASL, & QT1, QT2, et al. * Landman, Bennett A., et al. "Multi-parametric neuroimaging reproducibility: a 3-T resource study." Neuroimage 54.4 (2011): 2854-2866. @@ -411,10 +411,10 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su ### OASIS Longitudinal * OASIS Longitudinal * https://www.oasis-brains.org/ -* Subject +* Subject * N = 150 * 60-96 years old -* Data +* Data * 1.5 T scanner * T1 * two or more scans, at least one year (183-1707 day intervals) @@ -476,9 +476,9 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * Subjects * N = 12 * 10 males, 2 females - * age between 26 and 40 years old (median = 34.5 years) + * age between 26 and 40 years old (median = 34.5 years) * Data - * Siemens 3T + * Siemens 3T * T1/T2/dMRI/task fMRI * multiple tasks for each subject, Spatial, Standard, Social, Emotional, Emotion, Gambling, Motor, Language, Relational, WM * Pinho, Ana Luísa, et al. "Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping." Scientific data 5 (2018). @@ -494,3 +494,17 @@ A list of brain imaging databases with multiple (e.g., more than 3) scans per su * T1/T2/FLAIR/PD * each subject has 4 ~ 6 time-point scans * Carass, A., Roy, S., et al. (2017). Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. NeuroImage, 148, 77–102 + + +### CNeuroMod + * The Courtois Project on Neuronal Modelling + * https://cneuromod.ca/ + * Subjects + * N = 6 + * 3 males, 3 females + * Data + * Siemens 3T + * T1/T2/qMRI brain + cervical spine + * ~200h of fMRI per subject + * multiple tasks: controlled an naturalistic, movie watching, videogames, vision, memory, audition, language + * Boyle, J.A., Pinsard, B., et al. (June 2020). The Courtois project on neuronal modelling - 2020 data release. Poster 1939 was presented at the 2020 Annual Meeting of the Organization for Human Brain Mapping, held virtually.