docs

Documentation

This directory contains user-facing documentation and guides for the CommunityMech knowledge base.

User Guides

Getting Started

• QUICK_START.md - Quick start guide for using CommunityMech
• UMAP_QUICK_START.md - Quick start guide for UMAP visualization

Feature Guides

• FILTER_TESTING_GUIDE.md - Testing guide for filter panel functionality
• GROWTH_MEDIA_GUIDE.md - Guide for growth media metadata
• UMAP_VISUALIZATION.md - UMAP visualization documentation
• UMAP_COLOR_GUIDE.md - Color scheme guide for UMAP plots

Curation & Quality

• NETWORK_QUALITY_GUIDE.md - Network quality assurance guide
• NETWORK_REPAIR_USER_GUIDE.md - User guide for network repair tools
• CURATION_PROGRESS_REPORT.md - Community curation progress
• CULTUREMECH_MAPPING_GUIDE.md - CultureMech mapping guide

Automation & Tools

• AUTOMATION_TOOLS.md - Automation tools documentation
• LLM_SETUP_GUIDE.md - LLM-assisted curation setup
• LLM_REPAIR_ROADMAP.md - Roadmap for LLM repair capabilities
• pdf_fetching_capability.md - PDF fetching feature documentation

Main Project Documentation

See ../README.md in the project root for:

• Project overview and architecture
• Installation and setup instructions
• Core commands and workflows
• LinkML schema documentation

Developer Instructions

See ../CLAUDE.md for AI assistant instructions and project conventions.