From 87b4c77326feabb47191130a480a0184bc12f394 Mon Sep 17 00:00:00 2001 From: aofarrel Date: Thu, 16 Jun 2022 16:01:13 -0700 Subject: [PATCH] draft --- .gitignore | 3 ++- _test-data-and-truths_/runtests.sh | 8 ++++++++ 2 files changed, 10 insertions(+), 1 deletion(-) create mode 100644 _test-data-and-truths_/runtests.sh diff --git a/.gitignore b/.gitignore index 62f9d9f..b09e55e 100644 --- a/.gitignore +++ b/.gitignore @@ -12,4 +12,5 @@ assoc-aggregate/cromwell-68.1.jar *.integer *.zip cwl.output.json -job.json \ No newline at end of file +job.json +_test-data-and-truths_/assoc/big_silly_file_chr1.gds diff --git a/_test-data-and-truths_/runtests.sh b/_test-data-and-truths_/runtests.sh new file mode 100644 index 0000000..78739ba --- /dev/null +++ b/_test-data-and-truths_/runtests.sh @@ -0,0 +1,8 @@ +#!/bin/bash +# run from the parent directory analysis_pipeline_wdl, not from the test data directory + +ddoc vcf-to-gds/checker/vcf-to-gds-checker.wdl --json vcf-to-gds/checker/vcf-to-gds-checker.json +ddoc ld-pruning/checker/ld-pruning-checker.wdl --json ld-pruning/checker/ld-pruning-checker.json +ddoc king/checker/king-checker.wdl --json king/checker/king-checker.json +ddoc null-model/checker/null-model-checker.wdl --json null-model/checker/null-model-checker.json +ddoc assoc-aggregate/checker/assoc-aggregate-checker.wdl --json assoc-aggregate/checker/assoc-aggregate-checker.json \ No newline at end of file