From ec9785dabfbd82d82c389877779a0392eb89443d Mon Sep 17 00:00:00 2001 From: Greg Jordan Date: Mon, 11 Oct 2021 11:00:07 -0400 Subject: [PATCH] Update docs with known-good Nextflow config I was tinkering a bit with the CLI today and ran into some errors using the example provided here in the README. This PR updates the example 'gls' Nextflow profile to work correctly with a recent Terra-configured workspace. --- README.md | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 8c4c19c8d..f21aecf05 100644 --- a/README.md +++ b/README.md @@ -167,9 +167,13 @@ in the workspace's backing Google project). This is the same example workflow us process.executor = 'google-lifesciences' process.container = 'nextflow/rnaseq-nf:latest' workDir = "$TERRA_mybucket/scratch" - google.location = 'europe-west2' - google.region = 'europe-west1' + + google.region = 'us-east1' google.project = "$GOOGLE_CLOUD_PROJECT" + + google.lifeSciences.serviceAccountEmail = "$GOOGLE_SERVICE_ACCOUNT_EMAIL" + google.lifeSciences.network = 'network' + google.lifeSciences.subnetwork = 'subnetwork' } ``` - Do a dry-run to confirm the config is set correctly.