diff --git a/DeepNeuro_Glioblastoma.json b/DeepNeuro_Glioblastoma.json new file mode 100644 index 0000000..546a133 --- /dev/null +++ b/DeepNeuro_Glioblastoma.json @@ -0,0 +1,111 @@ +{ + "name": "DeepNeuro_Glioblastoma", + "number_of_inputs": 4, + "task": "Segmentation", + "organ": "Brain", + "modality": "MRI", + "train_test_data_details": "The model is trained on pre-processed brain MRIs from the BRATS2017 competition, as well as private datasets from multiple instituions.", + "briefdescription": "Segmentation of glioblastoma into whole tumor (peritumoral edema and necrosis) and enhancing tumor.", + "detaileddescription": "", + "website": "https://github.com/QTIM-Lab/DeepNeuro", + "citation": "", + "version": "0.1", + "docker": { + "dockerhub_repository": "qtimlab/deepneuro_segment_gbm", + "digest": "", + "size": "6.77 GB" + }, + "model_name": "deepneuro_glioblastoma", + "data_path": "/INPUT_DATA", + "members": [ + { + "name": "T2", + "type": "volume", + "iotype": "input", + "voltype": "ScalarVolume", + "detaileddescriptionSet": "T2-weighted MRI volume.\n", + "default": "std::vector(3, 64)", + "itk_type": "typename FilterType::SizeType" + }, + { + "name": "T1", + "type": "volume", + "iotype": "input", + "voltype": "ScalarVolume", + "detaileddescriptionSet": "T1-weighted MRI volume.\n", + "default": "std::vector(3, 64)", + "itk_type": "typename FilterType::SizeType" + }, + { + "name": "T1POST", + "type": "volume", + "iotype": "input", + "voltype": "ScalarVolume", + "detaileddescriptionSet": "T1-weighted MRI post-contrast volume.\n", + "default": "std::vector(3, 64)", + "itk_type": "typename FilterType::SizeType" + }, + { + "name": "FLAIR", + "type": "volume", + "iotype": "input", + "voltype": "ScalarVolume", + "detaileddescriptionSet": "FLAIR MRI volume.\n", + "default": "std::vector(3, 64)", + "itk_type": "typename FilterType::SizeType" + }, + { + "name": "debiased", + "type": "bool", + "default": "true", + "detaileddescriptionSet": "If data is already debiased, check this box.\n", + "iotype": "parameter" + }, + { + "name": "resampled", + "type": "bool", + "default": "true", + "detaileddescriptionSet": "If data is already isotropically resampled, check this box.\n", + "iotype": "parameter" + }, + { + "name": "registered", + "type": "bool", + "default": "true", + "detaileddescriptionSet": "If data is already registered, check this box.\n", + "iotype": "parameter" + }, + { + "name": "skullstripped", + "type": "bool", + "default": "true", + "detaileddescriptionSet": "If data is already skullstripped, check this box.\n", + "iotype": "parameter" + }, + { + "name": "GPU Number", + "type": "uint16_t", + "iotype": "parameter", + "param_name": "gpu_num", + "default": 0 + }, + { + "name": "Output_WholeTumor", + "type": "volume", + "iotype": "output", + "voltype": "LabelMap", + "detaileddescriptionSet": "Output labelmap for the segmentation results.\n", + "default": "std::vector(3, 64)", + "itk_type": "typename FilterType::SizeType" + }, + { + "name": "Output_EnhancingTumor", + "type": "volume", + "iotype": "output", + "voltype": "LabelMap", + "detaileddescriptionSet": "Output labelmap for the segmentation results.\n", + "default": "std::vector(3, 64)", + "itk_type": "typename FilterType::SizeType" + } + ] +} \ No newline at end of file