From c65e62bcd03ff2313aae62008e9c68a1d896f581 Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Fri, 7 Feb 2025 14:18:13 +0000 Subject: [PATCH 01/20] Submodules: created branch with required submodules to match gui_map.yaml and ioc.yaml --- .gitmodules | 7 +++++++ blgui | 1 + p47-services | 1 + src/phoebus_guibuilder/guibuilder.py | 4 ++-- 4 files changed, 11 insertions(+), 2 deletions(-) create mode 100644 .gitmodules create mode 160000 blgui create mode 160000 p47-services diff --git a/.gitmodules b/.gitmodules new file mode 100644 index 00000000..0be246e9 --- /dev/null +++ b/.gitmodules @@ -0,0 +1,7 @@ +[submodule "blgui"] + path = blgui + url = git@gitlab.diamond.ac.uk:controls/support/blgui.git + branch = BLGuiYaml +[submodule "p47-services"] + path = p47-services + url = https://github.com/epics-containers/p47-services.git diff --git a/blgui b/blgui new file mode 160000 index 00000000..4eac6444 --- /dev/null +++ b/blgui @@ -0,0 +1 @@ +Subproject commit 4eac6444e110cd60aaaee3b51453ec8cb0bbb9fd diff --git a/p47-services b/p47-services new file mode 160000 index 00000000..f4bf3a6d --- /dev/null +++ b/p47-services @@ -0,0 +1 @@ +Subproject commit f4bf3a6d315061cc6a5289a17a0fc64b529b2f0c diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index fa77b8c8..7f831a34 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -105,7 +105,7 @@ def find_services_folders(): services_directory = ( beamline.dom + "-services/services" ) # TODO: rm hardcoding, map to services. - path = f"/dls/science/users/uns32131/{services_directory}" + path = f"{services_directory}" files = os.listdir(path) # Attempting to match the prefix to the files in the services directory @@ -145,7 +145,7 @@ def extract_valid_entities(ioc_yaml: str, component: Component): def gui_map(entrys: list[Entry]): - gui_map = "/dls/science/users/uns32131/BLGui/BLGuiApp/opi/bob/gui_map.yaml" + gui_map = "blgui/BLGuiApp/opi/bob/gui_map.yaml" with open(gui_map) as map: conf = yaml.safe_load(map) From c4834667a3dbd438bde91d9eae66f1bcf1bd7779 Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Fri, 7 Feb 2025 15:04:18 +0000 Subject: [PATCH 02/20] Submodules: created branch with required submodules to match gui_map.yaml and ioc.yaml --- .github/workflows/_container.yml | 1 + .github/workflows/_test.yml | 1 + .github/workflows/_tox.yml | 3 ++- 3 files changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/_container.yml b/.github/workflows/_container.yml index da5e4936..4a02677d 100644 --- a/.github/workflows/_container.yml +++ b/.github/workflows/_container.yml @@ -10,6 +10,7 @@ jobs: uses: actions/checkout@v4 with: # Need this to get version number from last tag + submodules: recursive fetch-depth: 0 - name: Set up Docker Buildx diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index f652d414..98b20620 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -26,6 +26,7 @@ jobs: uses: actions/checkout@v4 with: # Need this to get version number from last tag + submodules: recursive fetch-depth: 0 - if: inputs.python-version == 'dev' diff --git a/.github/workflows/_tox.yml b/.github/workflows/_tox.yml index a13536d3..d6ae245d 100644 --- a/.github/workflows/_tox.yml +++ b/.github/workflows/_tox.yml @@ -6,7 +6,6 @@ on: description: What to run under tox required: true - jobs: run: runs-on: "ubuntu-latest" @@ -14,6 +13,8 @@ jobs: steps: - name: Checkout uses: actions/checkout@v4 + with: + submodules: recursive - name: Install python packages uses: ./.github/actions/install_requirements From 203ade7ac7cb7e0383158edb5333e64caa65fc86 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Fri, 7 Feb 2025 14:07:43 +0000 Subject: [PATCH 03/20] Fix versioning and tox env (#12) * Fix versioning and tox env * Fix create_gui.yaml path * More pyproject.toml fixes (versioning, tox); Added missing cdocs/conf.py * Fixes to tox envs for CI --- .pre-commit-config.yaml | 2 +- Dockerfile | 3 +- docs/conf.py | 231 +++++++++++++++++++++++++++++ poetry.lock | 214 +++++++++++++++++--------- pyproject.toml | 107 +++++++++---- src/phoebus_guibuilder/__init__.py | 2 +- 6 files changed, 464 insertions(+), 95 deletions(-) create mode 100644 docs/conf.py diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 60fc23f9..51e5ee2c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.5.0 + rev: v5.0.0 hooks: - id: check-added-large-files - id: check-yaml diff --git a/Dockerfile b/Dockerfile index 95a5fb1f..62346f3a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -4,8 +4,7 @@ ARG PYTHON_VERSION=3.12 FROM python:${PYTHON_VERSION} as developer # Add any system dependencies for the developer/build environment here -RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz \ +RUN apt-get update && apt-get upgrade \ && rm -rf /var/lib/apt/lists/* RUN pip install poetry>=2.0.0 diff --git a/docs/conf.py b/docs/conf.py new file mode 100644 index 00000000..802c57a9 --- /dev/null +++ b/docs/conf.py @@ -0,0 +1,231 @@ +"""Configuration file for the Sphinx documentation builder. + +This file only contains a selection of the most common options. For a full +list see the documentation: +https://www.sphinx-doc.org/en/master/usage/configuration.html +""" + +import os +import sys +from pathlib import Path +from subprocess import check_output + +import requests + +import phoebus_guibuilder + +# -- General configuration ------------------------------------------------ +sys.path.insert(0, os.path.abspath("../../src")) +# General information about the project. +project = "phoebus-guibuilder" +copyright = "2025, Diamond Light Source" + +# The full version, including alpha/beta/rc tags. +release = phoebus_guibuilder.__version__ + +# The short X.Y version. +if "+" in release: + # Not on a tag, use branch name + root = Path(__file__).absolute().parent.parent + git_branch = check_output("git branch --show-current".split(), cwd=root) + version = git_branch.decode().strip() +else: + version = release + +extensions = [ + # for diagrams + "sphinxcontrib.mermaid", + # Used for BaseModel autodoc + "sphinxcontrib.autodoc_pydantic", + # Use this for generating API docs + "sphinx.ext.autodoc", + # Not sure if this is still used? + "sphinx.ext.doctest", + # and making summary tables at the top of API docs + "sphinx.ext.autosummary", + # This can parse google style docstrings + "sphinx.ext.napoleon", + # For linking to external sphinx documentation + "sphinx.ext.intersphinx", + # Add links to source code in API docs + "sphinx.ext.viewcode", + # Adds the inheritance-diagram generation directive + "sphinx.ext.inheritance_diagram", + # Add a copy button to each code block + "sphinx_copybutton", + # For the card element + "sphinx_design", + "sphinx.ext.mathjax", + "sphinx.ext.githubpages", +] + +napoleon_google_docstring = False + +# If true, Sphinx will warn about all references where the target cannot +# be found. +# nitpicky = True + +# A list of (type, target) tuples (by default empty) that should be ignored when +# generating warnings in "nitpicky mode". Note that type should include the +# domain name if present. Example entries would be ('py:func', 'int') or +# ('envvar', 'LD_LIBRARY_PATH'). +nitpick_ignore = [ + # builtins + ("py:class", "NoneType"), + ("py:class", "'str'"), + ("py:class", "'float'"), + ("py:class", "'int'"), + ("py:class", "'bool'"), + ("py:class", "'object'"), + ("py:class", "'id'"), + # typing + ("py:class", "typing_extensions.Literal"), +] + +# Order the members by the order they appear in the source code +autodoc_member_order = "bysource" + +# Don't inherit docstrings from baseclasses +autodoc_inherit_docstrings = False + +# Add some more modules to the top level autosummary +phoebus_guibuilder.__all__ += [] + +# Document only what is in __all__ +autosummary_ignore_module_all = False + +# Add any paths that contain templates here, relative to this directory. +templates_path = ["_templates"] + +# Output graphviz directive produced images in a scalable format +graphviz_output_format = "svg" + +# The name of a reST role (builtin or Sphinx extension) to use as the default +# role, that is, for text marked up `like this` +default_role = "any" + +# The suffix of source filenames. +source_suffix = ".rst" + +# The master toctree document. +master_doc = "index" + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# These patterns also affect html_static_path and html_extra_path +exclude_patterns = ["_build"] + +# The name of the Pygments (syntax highlighting) style to use. +pygments_style = "sphinx" + + +# Example configuration for intersphinx: refer to the Python standard library. +# This means you can link things like `str` and `asyncio` to the relevant +# docs in the python documentation. +intersphinx_mapping = { + "python": ("https://docs.python.org/3", None), +} + +# A dictionary of graphviz graph attributes for inheritance diagrams. +inheritance_graph_attrs = {"rankdir": "TB"} + +# Common links that should be available on every page +rst_epilog = """ +.. _NSLS: https://www.bnl.gov/nsls2 +.. _black: https://github.com/psf/black +.. _ruff: https://beta.ruff.rs/docs/ +.. _mypy: http://mypy-lang.org/ +.. _pre-commit: https://pre-commit.com/ +""" + +# Ignore localhost links for periodic check that links in docs are valid +linkcheck_ignore = [r"http://localhost:\d+/"] + +# Set copy-button to ignore python and bash prompts +# https://sphinx-copybutton.readthedocs.io/en/latest/use.html#using-regexp-prompt-identifiers +copybutton_prompt_text = r">>> |\.\.\. |\$ |In \[\d*\]: | {2,5}\.\.\.: | {5,8}: " +copybutton_prompt_is_regexp = True + +# -- Options for HTML output ------------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +# +html_theme = "pydata_sphinx_theme" +github_repo = "phoebus-guibuilder" +github_user = "DiamondLightSource" +switcher_json = "https://diamondlightsource.github.io/phoebus-guibuilder/switcher.json" +switcher_exists = requests.get(switcher_json).ok +if not switcher_exists: + print( + "*** Can't read version switcher, is GitHub pages enabled? \n" + " Once Docs CI job has successfully run once, set the " + "Github pages source branch to be 'gh-pages' at:\n" + f" https://github.com/{github_user}/{github_repo}/settings/pages", + file=sys.stderr, + ) + +# Theme options for pydata_sphinx_theme +# We don't check switcher because there are 3 possible states for a repo: +# 1. New project, docs are not published so there is no switcher +# 2. Existing project with latest skeleton, switcher exists and works +# 3. Existing project with old skeleton that makes broken switcher, +# switcher exists but is broken +# Point 3 makes checking switcher difficult, because the updated skeleton +# will fix the switcher at the end of the docs workflow, but never gets a chance +# to complete as the docs build warns and fails. +html_theme_options = { + "use_edit_page_button": True, + "github_url": f"https://github.com/{github_user}/{github_repo}", + "icon_links": [ + { + "name": "PyPI", + "url": f"https://pypi.org/project/{project}", + "icon": "fas fa-cube", + }, + ], + "switcher": { + "json_url": switcher_json, + "version_match": version, + }, + "check_switcher": False, + "navbar_end": ["theme-switcher", "icon-links", "version-switcher"], + "navigation_with_keys": False, +} + +# A dictionary of values to pass into the template engine’s context for all pages +html_context = { + "github_user": github_user, + "github_repo": project, + "github_version": version, + "doc_path": "docs", +} + +# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. +html_show_sphinx = False + +# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. +html_show_copyright = False + +# Logo +# html_logo = "images/phoebus-guibuilder-logo.svg" +# html_favicon = "images/phoebus-guibuilder-favicon.svg" + +# If False and a module has the __all__ attribute set, autosummary documents +# every member listed in __all__ and no others. Default is True +autosummary_ignore_module_all = False + +# Turn on sphinx.ext.autosummary +autosummary_generate = True + +# Add any paths that contain templates here, relative to this directory. +templates_path = ["_templates"] + +# Look for signatures in the first line of the docstring (used for C functions) +autodoc_docstring_signature = True + +# Don't show config summary as it's not relevant +autodoc_pydantic_model_show_config_summary = False + +# Show the fields in source order +autodoc_pydantic_model_summary_list_order = "bysource" diff --git a/poetry.lock b/poetry.lock index cf56dfbd..ff20ad02 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,5 +1,25 @@ # This file is automatically @generated by Poetry 2.0.1 and should not be changed by hand. +[[package]] +name = "accessible-pygments" +version = "0.0.5" +description = "A collection of accessible pygments styles" +optional = true +python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"dev\"" +files = [ + {file = "accessible_pygments-0.0.5-py3-none-any.whl", hash = "sha256:88ae3211e68a1d0b011504b2ffc1691feafce124b845bd072ab6f9f66f34d4b7"}, + {file = "accessible_pygments-0.0.5.tar.gz", hash = "sha256:40918d3e6a2b619ad424cb91e556bd3bd8865443d9f22f1dcdf79e33c8046872"}, +] + +[package.dependencies] +pygments = ">=1.5" + +[package.extras] +dev = ["pillow", "pkginfo (>=1.10)", "playwright", "pre-commit", "setuptools", "twine (>=5.0)"] +tests = ["hypothesis", "pytest"] + [[package]] name = "alabaster" version = "0.7.16" @@ -82,6 +102,43 @@ files = [ [package.extras] dev = ["backports.zoneinfo", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata"] +[[package]] +name = "beautifulsoup4" +version = "4.13.3" +description = "Screen-scraping library" +optional = true +python-versions = ">=3.7.0" +groups = ["main"] +markers = "extra == \"dev\"" +files = [ + {file = "beautifulsoup4-4.13.3-py3-none-any.whl", hash = "sha256:99045d7d3f08f91f0d656bc9b7efbae189426cd913d830294a15eefa0ea4df16"}, + {file = "beautifulsoup4-4.13.3.tar.gz", hash = "sha256:1bd32405dacc920b42b83ba01644747ed77456a65760e285fbc47633ceddaf8b"}, +] + +[package.dependencies] +soupsieve = ">1.2" +typing-extensions = ">=4.0.0" + +[package.extras] +cchardet = ["cchardet"] +chardet = ["chardet"] +charset-normalizer = ["charset-normalizer"] +html5lib = ["html5lib"] +lxml = ["lxml"] + +[[package]] +name = "cachetools" +version = "5.5.1" +description = "Extensible memoizing collections and decorators" +optional = true +python-versions = ">=3.7" +groups = ["main"] +markers = "extra == \"dev\"" +files = [ + {file = "cachetools-5.5.1-py3-none-any.whl", hash = "sha256:b76651fdc3b24ead3c648bbdeeb940c1b04d365b38b4af66788f9ec4a81d42bb"}, + {file = "cachetools-5.5.1.tar.gz", hash = "sha256:70f238fbba50383ef62e55c6aff6d9673175fe59f7c6782c7a0b9e38f4a9df95"}, +] + [[package]] name = "certifi" version = "2025.1.31" @@ -108,6 +165,19 @@ files = [ {file = "cfgv-3.4.0.tar.gz", hash = "sha256:e52591d4c5f5dead8e0f673fb16db7949d2cfb3f7da4582893288f0ded8fe560"}, ] +[[package]] +name = "chardet" +version = "5.2.0" +description = "Universal encoding detector for Python 3" +optional = true +python-versions = ">=3.7" +groups = ["main"] +markers = "extra == \"dev\"" +files = [ + {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"}, + {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"}, +] + [[package]] name = "charset-normalizer" version = "3.4.1" @@ -548,22 +618,6 @@ files = [ {file = "packaging-24.2.tar.gz", hash = "sha256:c228a6dc5e932d346bc5739379109d49e8853dd8223571c7c5b55260edc0b97f"}, ] -[[package]] -name = "pathlib2" -version = "2.3.7.post1" -description = "Object-oriented filesystem paths" -optional = true -python-versions = "*" -groups = ["main"] -markers = "extra == \"dev\"" -files = [ - 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{file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"}, - {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"}, -] - [[package]] name = "sniffio" version = "1.3.1" @@ -1088,6 +1178,19 @@ files = [ {file = "snowballstemmer-2.2.0.tar.gz", hash = "sha256:09b16deb8547d3412ad7b590689584cd0fe25ec8db3be37788be3810cbf19cb1"}, ] +[[package]] +name = "soupsieve" +version = "2.6" +description = "A modern CSS selector implementation for Beautiful Soup." +optional = true +python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"dev\"" +files = [ + {file = "soupsieve-2.6-py3-none-any.whl", hash = "sha256:e72c4ff06e4fb6e4b5a9f0f55fe6e81514581fca1515028625d0f299c602ccc9"}, + {file = "soupsieve-2.6.tar.gz", hash = "sha256:e2e68417777af359ec65daac1057404a3c8a5455bb8abc36f1a9866ab1a51abb"}, +] + [[package]] name = "sphinx" version = "7.3.7" @@ -1342,51 +1445,30 @@ full = ["httpx (>=0.27.0,<0.29.0)", "itsdangerous", "jinja2", "python-multipart [[package]] name = "tox" -version = "3.28.0" +version = "4.24.1" description = "tox is a generic virtualenv management and test command line tool" optional = true -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" -groups = ["main"] -markers = "extra == \"dev\"" -files = [ - {file = "tox-3.28.0-py2.py3-none-any.whl", hash = "sha256:57b5ab7e8bb3074edc3c0c0b4b192a4f3799d3723b2c5b76f1fa9f2d40316eea"}, - {file = "tox-3.28.0.tar.gz", hash = "sha256:d0d28f3fe6d6d7195c27f8b054c3e99d5451952b54abdae673b71609a581f640"}, -] - -[package.dependencies] -colorama = {version = ">=0.4.1", markers = "platform_system == \"Windows\""} -filelock = ">=3.0.0" -packaging = ">=14" -pluggy = ">=0.12.0" -py = ">=1.4.17" -six = ">=1.14.0" -virtualenv = ">=16.0.0,<20.0.0 || >20.0.0,<20.0.1 || >20.0.1,<20.0.2 || >20.0.2,<20.0.3 || >20.0.3,<20.0.4 || >20.0.4,<20.0.5 || >20.0.5,<20.0.6 || >20.0.6,<20.0.7 || >20.0.7" - -[package.extras] -docs = ["pygments-github-lexers (>=0.0.5)", "sphinx (>=2.0.0)", "sphinxcontrib-autoprogram (>=0.1.5)", "towncrier (>=18.5.0)"] -testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pathlib2 (>=2.3.3)", "psutil (>=5.6.1)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)"] - -[[package]] -name = "tox-direct" -version = "0.4" -description = "plugin for tox - run everything directly (tox creates no virtual env)" -optional = true -python-versions = "*" +python-versions = ">=3.8" groups = ["main"] markers = "extra == \"dev\"" files = [ - {file = "tox-direct-0.4.tar.gz", hash = "sha256:33bb6627db50c1c1760f889410bf77107e4858cf15a0f4532442fd690b6284c8"}, - {file = "tox_direct-0.4-py2.py3-none-any.whl", hash = "sha256:d80968dfbaf99198d7fa77fb2c20786f6bcf584000be96217a4ffd74dd4b3699"}, + {file = "tox-4.24.1-py3-none-any.whl", hash = "sha256:57ba7df7d199002c6df8c2db9e6484f3de6ca8f42013c083ea2d4d1e5c6bdc75"}, + {file = "tox-4.24.1.tar.gz", hash = "sha256:083a720adbc6166fff0b7d1df9d154f9d00bfccb9403b8abf6bc0ee435d6a62e"}, ] [package.dependencies] -pathlib2 = "*" -py = "*" -tox = ">=3.12,<4" +cachetools = ">=5.5" +chardet = ">=5.2" +colorama = ">=0.4.6" +filelock = ">=3.16.1" +packaging = ">=24.2" +platformdirs = ">=4.3.6" +pluggy = ">=1.5" +pyproject-api = ">=1.8" +virtualenv = ">=20.27.1" [package.extras] -publish = ["twine"] -test = ["pytest"] +test = ["devpi-process (>=1.0.2)", "pytest (>=8.3.3)", "pytest-mock (>=3.14)"] [[package]] name = "types-mock" @@ -1654,9 +1736,9 @@ files = [ ] [extras] -dev = ["autodoc-pydantic", "pre-commit", "pyright", "pytest", "pytest-asyncio", "pytest-cov", "pytest-faulthandler", "pytest-forked", "pytest-rerunfailures", "pytest-timeout", "ruff", "sphinx", "sphinx-autobuild", "sphinx-copybutton", "sphinx-design", "sphinxcontrib-mermaid", "tox-direct", "types-mock", "types-pyyaml"] +dev = ["autodoc-pydantic", "pre-commit", "pydata-sphinx-theme", "pyright", "pytest", "pytest-asyncio", "pytest-cov", "pytest-faulthandler", "pytest-forked", "pytest-rerunfailures", "pytest-timeout", "ruff", "sphinx", "sphinx-autobuild", "sphinx-copybutton", "sphinx-design", "sphinxcontrib-mermaid", "tox", "types-mock", "types-pyyaml"] [metadata] lock-version = "2.1" python-versions = ">=3.12" -content-hash = "8e91bdcebd947df92f6fd0152dff571092b45a81b866645fceb6c27c9dd183bf" +content-hash = "a57e70cf904fb4be42a7239643293468333808127aa743eee2a40464cd6fc535" diff --git a/pyproject.toml b/pyproject.toml index 098f368a..c2e3f65f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "phoebus-guibuilder" -version = "0.1.0" +dynamic = ["version"] description = "A package for building GUIs" classifiers = [ "Development Status :: 3 - Alpha", @@ -18,6 +18,7 @@ requires-python = ">=3.12" dependencies = ["pyyaml (>=6.0.2)"] optional-dependencies = { dev = [ "pre-commit", + "pydata-sphinx-theme>=0.12", "pyright", "pytest", "pytest-asyncio", @@ -33,16 +34,42 @@ optional-dependencies = { dev = [ "sphinxcontrib-mermaid", "sphinx-copybutton", "sphinx-design", - "tox-direct", + "tox>=4.22", "types-mock", "types-pyyaml", ] } [build-system] -requires = ["poetry-core>=2.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"] +requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"] build-backend = "poetry_dynamic_versioning.backend" +[tool.poetry] +include = ["src/phoebus_guibuilder/_version.py"] +version = "0.1.0" + +[tool.poetry.requires-plugins] +poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] } + +[tool.poetry-dynamic-versioning] +enable = true +vcs = "git" +latest-tag = true +bump = true +metadata = false +# allows for tags with the format 0.1.0a1 +pattern = "((?P\\d+(\\.\\d+)*)(?P[a-zA-Z]+)?(?P\\d+)?)" + +[tool.poetry-dynamic-versioning.files."src/phoebus_guibuilder/_version.py"] +persistent-substitution = true +initial-content = """ + # These version placeholders will be replaced later during substitution. + __version__ = "0.1.0" + __version_tuple__ = (0, 1, 0) +""" + +[tool.poetry-dynamic-versioning.substitution] +folders = [{ path = "src" }] # [tool.setuptools_scm] # version_file = "src/phoebus_guibuilder/_version.py" # overwrites base version @@ -79,29 +106,59 @@ data_file = "/tmp/phoebus_guibuilder.coverage" # Tests are run from installed location, map back to the src directory source = ["src", "**/site-packages/"] -# tox must currently be configured via an embedded ini string -# See: https://github.com/tox-dev/tox/issues/999 [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist=True - -[testenv:{pre-commit,type-checking,tests,docs}] -# Don't create a virtualenv for the command, requires tox-direct plugin -direct = True -passenv = * -allowlist_externals = - pytest - pre-commit - pyright - sphinx-build - sphinx-autobuild -commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - type-checking: pyright src {posargs} - tests: pytest --cov=phoebus_guibuilder --cov-report term --cov-report xml:cov.xml {posargs} - docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -""" +skipsdist = true + +[tool.tox.env.pre-commit] +description = "Run pre-commit" +direct = true +allowlist_externals = ["pre-commit"] +commands = [ + [ + "pre-commit", + "run", + "--all-files", + "--show-diff-on-failure", + "{posargs}", + ], +] + +[tool.tox.env.type-checking] +description = "Run type-checking" +direct = true +allowlist_externals = ["pyright"] +commands = [["pyright", "src", "{posargs}"]] + +[tool.tox.env.tests] +description = "Run tests" +direct = true +allowlist_externals = ["pytest"] +commands = [ + [ + "pytest", + "--cov=phoebus_guibuilder", + "--cov-report", + "term", + "--cov-report", + "xml:cov.xml", + "{posargs}", + ], +] + +[tool.tox.env.docs] +description = "Run docs" +direct = true +allowlist_externals = ["sphinx-build", "sphinx-autobuild"] +commands = [ + [ + "sphinx-{posargs:build}", + "-EW", + "--keep-going", + "-T", + "docs", + "build/html", + ], +] [tool.ruff] src = ["src", "tests", "system_tests"] diff --git a/src/phoebus_guibuilder/__init__.py b/src/phoebus_guibuilder/__init__.py index 8f13ca27..4f8ce1aa 100644 --- a/src/phoebus_guibuilder/__init__.py +++ b/src/phoebus_guibuilder/__init__.py @@ -3,7 +3,7 @@ .. data:: __version__ :type: str - Version number as calculated by https://github.com/pypa/setuptools_scm + Version number as calculated by poetry-dynamic-versioning """ from importlib.metadata import version From 0a2734c352cbe888d0d7a1138205e08d702cd805 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 7 Feb 2025 15:46:41 +0000 Subject: [PATCH 04/20] Bump the actions group with 2 updates (#11) Bumps the actions group with 2 updates: [softprops/action-gh-release](https://github.com/softprops/action-gh-release) and [codecov/codecov-action](https://github.com/codecov/codecov-action). Updates `softprops/action-gh-release` from 2.0.9 to 2.2.1 - [Release notes](https://github.com/softprops/action-gh-release/releases) - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) - [Commits](https://github.com/softprops/action-gh-release/compare/e7a8f85e1c67a31e6ed99a94b41bd0b71bbee6b8...c95fe1489396fe8a9eb87c0abf8aa5b2ef267fda) Updates `codecov/codecov-action` from 4 to 5 - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v4...v5) --- updated-dependencies: - dependency-name: softprops/action-gh-release dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/_release.yml | 2 +- .github/workflows/_test.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/_release.yml b/.github/workflows/_release.yml index 81b62643..517bcf8e 100644 --- a/.github/workflows/_release.yml +++ b/.github/workflows/_release.yml @@ -23,7 +23,7 @@ jobs: - name: Create GitHub Release # We pin to the SHA, not the tag, for security reasons. # https://docs.github.com/en/actions/learn-github-actions/security-hardening-for-github-actions#using-third-party-actions - uses: softprops/action-gh-release@e7a8f85e1c67a31e6ed99a94b41bd0b71bbee6b8 # v2.0.9 + uses: softprops/action-gh-release@c95fe1489396fe8a9eb87c0abf8aa5b2ef267fda # v2.2.1 with: prerelease: ${{ contains(github.ref_name, 'a') || contains(github.ref_name, 'b') || contains(github.ref_name, 'rc') }} files: "*" diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index 98b20620..92be39b2 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -55,7 +55,7 @@ jobs: run: tox -e tests - name: Upload coverage to Codecov - uses: codecov/codecov-action@v4 + uses: codecov/codecov-action@v5 with: name: ${{ inputs.python-version }}/${{ inputs.runs-on }} files: cov.xml From 2dc95a2057bd451f3bac0e74934de7513ec1d4e8 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Tue, 11 Feb 2025 09:04:31 +0000 Subject: [PATCH 05/20] Add intial tests; Make changes to project files to allow for testing --- poetry.lock | 2 +- pyproject.toml | 3 +- src/phoebus_guibuilder/guibuilder.py | 12 ++++---- tests/test_objects.py | 43 ++++++++++++++++++++++++++++ 4 files changed, 51 insertions(+), 9 deletions(-) create mode 100644 tests/test_objects.py diff --git a/poetry.lock b/poetry.lock index ff20ad02..a5734e59 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1741,4 +1741,4 @@ dev = ["autodoc-pydantic", "pre-commit", "pydata-sphinx-theme", "pyright", "pyte [metadata] lock-version = "2.1" python-versions = ">=3.12" -content-hash = "a57e70cf904fb4be42a7239643293468333808127aa743eee2a40464cd6fc535" +content-hash = "91c8626941442e0af52999e4a5b4a0b6bc8e19fc50973f7c73ea0d8b75d1c111" diff --git a/pyproject.toml b/pyproject.toml index c2e3f65f..22c23e8a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -38,6 +38,7 @@ optional-dependencies = { dev = [ "types-mock", "types-pyyaml", ] } +scripts = { phoebus_guibuilder = "phoebus_guibuilder.__main__:main" } [build-system] @@ -83,7 +84,7 @@ reportMissingImports = false # Ignore missing stubs in imported modules addopts = """ --tb=native -vv --strict-markers --doctest-modules --doctest-glob="*.rst" --doctest-glob="*.md" - --ignore=docs/examples --ignore=src/phoebus_guibuilder/epics/signal.py + --ignore=docs/examples """ # https://iscinumpy.gitlab.io/post/bound-version-constraints/#watch-for-warnings filterwarnings = "error" diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index 7f831a34..f118b907 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -2,7 +2,6 @@ import pprint import re from dataclasses import dataclass -from warnings import warn import yaml @@ -36,7 +35,7 @@ def __post_init__(self): def __repr__(self) -> str: return f"Component(name={self.name}, desc={self.desc}, prefix={self.P}, \ - suffix={self.R}, filename={self.filename})" +suffix={self.R}, filename={self.filename})" def _extract_p_and_r(self): pattern = re.compile( @@ -71,8 +70,7 @@ def _extract_p_and_r(self): # TODO: Is this needed? self.attribute: str | None = match.group(3) else: - warn(f"No valid PV prefix found for {self.name}.", stacklevel=1) - exit() + raise AttributeError(f"No valid PV prefix found for {self.name}.") components: list[Component] = [] # TODO Manage global lists better @@ -163,6 +161,6 @@ def gui_map(entrys: list[Entry]): print("No BOB available") -find_services_folders() -print(valid_entities) -gui_map(valid_entities) +# find_services_folders() +# print(valid_entities) +# gui_map(valid_entities) diff --git a/tests/test_objects.py b/tests/test_objects.py new file mode 100644 index 00000000..acb0357a --- /dev/null +++ b/tests/test_objects.py @@ -0,0 +1,43 @@ +import pytest + +from phoebus_guibuilder.guibuilder import Beamline, Component + + +@pytest.fixture +def beamline() -> Beamline: + return Beamline("BL01T", "Test Beamline") + + +@pytest.fixture +def component() -> Component: + return Component("TESTDEV", "Test Device", "BL01T-EA-TEST-02") + + +# @pytest.mark.parametrize("beamline,expected",[]) +def test_beamline_object(beamline): + assert beamline.dom == "BL01T" + assert beamline.desc == "Test Beamline" + + +def test_component_object(component): + assert component.name == "TESTDEV" + assert component.desc == "Test Device" + assert component.P == "BL01T-EA-TEST-02" + assert component.R is None + assert component.attribute is None + + +def test_component_repr(component): + assert ( + str(component) + == "Component(name=TESTDEV, desc=Test Device, \ +prefix=BL01T-EA-TEST-02, suffix=None, filename=None)" + ) + + +def test_component_bad_prefix(): + with pytest.raises(AttributeError): + Component("BL02T-BAD", "Test 2", "BAD_PREFIX") + + +# def test_component_regex(): From 4194cd4e590beed58140835d7517895de8b38674 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Tue, 11 Feb 2025 09:41:32 +0000 Subject: [PATCH 06/20] Add ruff configuration to vscode settings --- .vscode/settings.json | 1 + 1 file changed, 1 insertion(+) diff --git a/.vscode/settings.json b/.vscode/settings.json index b5845520..4f60ca31 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -10,4 +10,5 @@ "editor.defaultFormatter": "charliermarsh.ruff", }, "python.analysis.autoImportCompletions": true, + "ruff.configuration": "pyproject.toml", } From 4c5b14691920a3c205ca92770adea8c62c43c973 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 13 Feb 2025 16:13:23 +0000 Subject: [PATCH 07/20] Add missing -y to apt update in Dockerfile; Fix typo --- Dockerfile | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/Dockerfile b/Dockerfile index 62346f3a..a6fe6006 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,11 +1,10 @@ # The devcontainer should use the developer target and run as root with podman # or docker with user namespaces. ARG PYTHON_VERSION=3.12 -FROM python:${PYTHON_VERSION} as developer +FROM python:${PYTHON_VERSION} AS developer # Add any system dependencies for the developer/build environment here -RUN apt-get update && apt-get upgrade \ - && rm -rf /var/lib/apt/lists/* +RUN apt-get update && apt-get upgrade -y && rm -rf /var/lib/apt/lists/* RUN pip install poetry>=2.0.0 From 0e1aafcb7c3e254564b16b8a4a485ab58f5293f5 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 13 Feb 2025 16:13:50 +0000 Subject: [PATCH 08/20] Update poetry.lock --- poetry.lock | 225 ++++++++++++++++++++++++++-------------------------- 1 file changed, 113 insertions(+), 112 deletions(-) diff --git a/poetry.lock b/poetry.lock index a5734e59..64d850d6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -22,15 +22,15 @@ tests = ["hypothesis", "pytest"] [[package]] name = "alabaster" -version = "0.7.16" +version = "1.0.0" description = "A light, configurable Sphinx theme" optional = true -python-versions = ">=3.9" +python-versions = ">=3.10" groups = ["main"] markers = "extra == \"dev\"" files = [ - {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, - {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, + {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"}, + {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"}, ] [[package]] @@ -312,75 +312,76 @@ files = [ [[package]] name = "coverage" -version = "7.6.10" +version = "7.6.12" description = "Code coverage measurement for Python" optional = true python-versions = ">=3.9" groups = ["main"] markers = "extra == \"dev\"" files = [ - {file = "coverage-7.6.10-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:5c912978f7fbf47ef99cec50c4401340436d200d41d714c7a4766f377c5b7b78"}, - {file = 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.../actions/install_requirements/action.yml | 22 +- .pre-commit-config.yaml | 6 +- Dockerfile | 6 +- poetry.lock | 871 +++++++++++++++++- pyproject.toml | 9 +- src/phoebus_guibuilder/__main__.py | 7 +- src/phoebus_guibuilder/guibuilder.py | 39 +- 7 files changed, 924 insertions(+), 36 deletions(-) diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml index d33e0805..dd81f676 100644 --- a/.github/actions/install_requirements/action.yml +++ b/.github/actions/install_requirements/action.yml @@ -4,9 +4,9 @@ inputs: python-version: description: Python version to install, default is from Dockerfile default: "dev" - pip-install: - description: Parameters to pass to pip install - default: "$([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e .[dev]" + poetry-version: + description: Poetry version to install, from pyproject.toml + default: $(yq '.project."optional-dependencies".dev[] | select(. | contains("poetry"))' pyproject.toml | grep -oE '[0-9]+\.[0-9]+\.[0-9]+') runs: using: composite @@ -25,10 +25,20 @@ runs: with: python-version: ${{ env.PYTHON_VERSION }} - - name: Install packages - run: pip install ${{ inputs.pip-install }} + - name: Install Poetry + uses: abatilo/actions-poetry@v2 + with: + poetry-version: ${{ inputs.poetry-version }} + + # - name: Install Poetry with specific version from pyproject.toml + # uses: snok/install-poetry@v1 + # with: + # poetry-version-from-pyproject-toml: true + + - name: Install dependencies + run: poetry install --no-root shell: bash - name: Report what was installed - run: pip freeze + run: poetry show shell: bash diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 51e5ee2c..f72b0c32 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -7,8 +7,11 @@ repos: - id: check-merge-conflict - id: end-of-file-fixer - - repo: local + - repo: https://github.com/astral-sh/ruff-pre-commit + # Ruff version. + rev: v0.9.6 hooks: + # 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b/src/phoebus_guibuilder/__main__.py index 66f927e3..c73b9103 100644 --- a/src/phoebus_guibuilder/__main__.py +++ b/src/phoebus_guibuilder/__main__.py @@ -3,7 +3,7 @@ from argparse import ArgumentParser from collections.abc import Sequence -from . import __version__ +from . import __version__, guibuilder __all__ = ["main"] @@ -11,13 +11,16 @@ def main(args: Sequence[str] | None = None) -> None: """Argument parser for the CLI.""" parser = ArgumentParser() + parser.add_argument("filename", help="The path to create_gui.yaml") parser.add_argument( "-v", "--version", action="version", version=__version__, ) - parser.parse_args(args) + _args = parser.parse_args(args) + + guibuilder.main(_args.filename) if __name__ == "__main__": diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index f118b907..50a9f643 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -73,33 +73,34 @@ def _extract_p_and_r(self): raise AttributeError(f"No valid PV prefix found for {self.name}.") -components: list[Component] = [] # TODO Manage global lists better -valid_entities: list[Entry] = [] +def main(filename: str): + components: list[Component] = [] # TODO Manage global lists better -with open("example/create_gui.yaml") as f: - conf = yaml.safe_load(f) + with open(filename) as f: + conf = yaml.safe_load(f) - bl: dict[str, str] = conf["beamline"] - comps: dict[str, dict[str, str]] = conf["components"] + bl: dict[str, str] = conf["beamline"] + comps: dict[str, dict[str, str]] = conf["components"] - beamline = Beamline(**bl) + beamline = Beamline(**bl) - for key, comp in comps.items(): - components.append(Component(key, **comp)) + for key, comp in comps.items(): + components.append(Component(key, **comp)) -print("BEAMLINE:") -pp.pprint(beamline) + print("BEAMLINE:") + pp.pprint(beamline) + + print("") + print("COMPONENTS") + pp.pprint(components) -print("") -print("COMPONENTS") -pp.pprint(components) ##################################################### # TODO Functionality should be in phoebusguibuilder class # class Phoebusguibuilder(beamline: Beamline, components: list[Component]): -def find_services_folders(): +def find_services_folders(beamline: Beamline, components: list[Component]): services_directory = ( beamline.dom + "-services/services" ) # TODO: rm hardcoding, map to services. @@ -118,17 +119,19 @@ def find_services_folders(): if match: if match.group(1) == domain.group(1).lower(): if os.path.exists(f"{path}/{file}/config/ioc.yaml"): - extract_valid_entities( + valid_entities = extract_valid_entities( ioc_yaml=f"{path}/{file}/config/ioc.yaml", component=component, ) + return valid_entities else: print(f"No ioc.yaml file for service: {file}") -def extract_valid_entities(ioc_yaml: str, component: Component): +def extract_valid_entities(ioc_yaml: str, component: Component) -> list[Entry]: print(type(ioc_yaml)) entities: list[dict[str, str]] = [] + valid_entities: list[Entry] = [] component_match = f"{component.P}:{component.R}" with open(ioc_yaml) as ioc: conf = yaml.safe_load(ioc) @@ -141,6 +144,8 @@ def extract_valid_entities(ioc_yaml: str, component: Component): Entry(type=entity["type"], DESC=None, P=entity["P"], M=None, R=None) ) + return valid_entities + def gui_map(entrys: list[Entry]): gui_map = "blgui/BLGuiApp/opi/bob/gui_map.yaml" From 9ccaa55db76f31ca056604465c982b9aad3b340e Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Mon, 17 Feb 2025 09:51:51 +0000 Subject: [PATCH 11/20] Converted to use PDM over poetry and nicer to configure --- .devcontainer/devcontainer.json | 4 +- .devcontainer/post-install.sh | 7 +- Dockerfile | 2 + pdm.lock | 1536 ++++++++++++++++ poetry.lock | 2610 ---------------------------- pyproject.toml | 45 +- src/phoebus_guibuilder/__init__.py | 4 +- 7 files changed, 1557 insertions(+), 2651 deletions(-) create mode 100644 pdm.lock delete mode 100644 poetry.lock diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index b8a3c126..656c1550 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -7,7 +7,9 @@ }, "remoteEnv": { // Allow X11 apps to run inside the container - "DISPLAY": "${localEnv:DISPLAY}" + "DISPLAY": "${localEnv:DISPLAY}", + // Add venv to path for cmd line tools to be recognised by default, e.g. tox + "PATH": "${containerWorkspaceFolder}/.venv/bin:${containerEnv:PATH}" }, "customizations": { "vscode": { diff --git a/.devcontainer/post-install.sh b/.devcontainer/post-install.sh index a60e5468..637f49c1 100644 --- a/.devcontainer/post-install.sh +++ b/.devcontainer/post-install.sh @@ -1,5 +1,4 @@ +pdm python install +pdm use -f .venv pip install --upgrade pip -pip install $([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e '.[dev]' -pre-commit install -poetry install -poetry env use 3 +pdm install -G dev diff --git a/Dockerfile b/Dockerfile index 3c3ee4e5..0bef1506 100644 --- a/Dockerfile +++ b/Dockerfile @@ -5,6 +5,8 @@ FROM python:${PYTHON_VERSION} AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt upgrade -y && rm -rf /var/lib/apt/lists/* +# Install PDM using the official installer script +RUN curl -sSL https://raw.githubusercontent.com/pdm-project/pdm/main/install-pdm.py | python3 - RUN wget https://github.com/mikefarah/yq/releases/latest/download/yq_linux_amd64 -O /usr/bin/yq \ && chmod +x /usr/bin/yq diff --git a/pdm.lock b/pdm.lock new file mode 100644 index 00000000..722ff865 --- /dev/null +++ b/pdm.lock @@ -0,0 +1,1536 @@ +# This file is @generated by PDM. +# It is not intended for manual editing. + +[metadata] +groups = ["default", "dev"] +strategy = ["inherit_metadata"] +lock_version = "4.5.0" +content_hash = "sha256:cf7fa2cf825e4e1d304820b76fdd8bc87afb2a987d74552f6e1031a69e567642" + +[[metadata.targets]] +requires_python = "~=3.12" + +[[package]] +name = "accessible-pygments" +version = "0.0.5" 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-[metadata] -lock-version = "2.1" -python-versions = ">=3.12,<4.0" -content-hash = "25160e4d190b652997e4f793e11f5bff23591cbc6ae3bb50f0ce695bd72a4817" diff --git a/pyproject.toml b/pyproject.toml index ea37c94a..2932b9c7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,9 +15,9 @@ authors = [ license = { file = "LICENSE" } readme = "README.md" requires-python = ">=3.12,<4.0" -dependencies = ["pyyaml (>=6.0.2)"] +dependencies = ["pyyaml>=6.0.2"] optional-dependencies = { dev = [ - "poetry>=2.0.0", + "pdm>=2.22.3", "pre-commit", "pydata-sphinx-theme>=0.12", "pyright", @@ -41,40 +41,19 @@ optional-dependencies = { dev = [ ] } scripts = { phoebus_guibuilder = "phoebus_guibuilder.__main__:main" } - [build-system] -requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"] -build-backend = "poetry_dynamic_versioning.backend" - -[tool.poetry] -include = ["src/phoebus_guibuilder/_version.py"] -version = "0.1.0" - -[tool.poetry.requires-plugins] -poetry-dynamic-versioning = { version = ">=1.0.0,<2.0.0", extras = ["plugin"] } +requires = ["pdm-backend"] +build-backend = "pdm.backend" -[tool.poetry-dynamic-versioning] -enable = false -vcs = "git" -latest-tag = true -bump = true -metadata = false +[tool.pdm.version] +fallback_version = "0.0.0" +source = "scm" +tag_filter = "*" # allows for tags with the format 0.1.0a1 -pattern = "((?P\\d+(\\.\\d+)*)(?P[a-zA-Z]+)?(?P\\d+)?)" - -[tool.poetry-dynamic-versioning.files."src/phoebus_guibuilder/_version.py"] -persistent-substitution = true -initial-content = """ - # These version placeholders will be replaced later during substitution. - __version__ = "0.1.0" - __version_tuple__ = (0, 1, 0) -""" - -[tool.poetry-dynamic-versioning.substitution] -folders = [{ path = "src" }] - -# [tool.setuptools_scm] -# version_file = "src/phoebus_guibuilder/_version.py" # overwrites base version +tag_regex = "(?P([1-9][0-9]*!)?(0|[1-9][0-9]*)(\\.(0|[1-9][0-9]*))*((a|b|c|rc)(0|[1-9][0-9]*))?)" +#version_format = "phoebus_guibuiler.version:format_version" +write_to = "phoebus_guibuilder/_version.py" +write_template = "__version__ = '{}'\n" [tool.pyright] typeCheckingMode = "standard" diff --git a/src/phoebus_guibuilder/__init__.py b/src/phoebus_guibuilder/__init__.py index 4f8ce1aa..8df6208a 100644 --- a/src/phoebus_guibuilder/__init__.py +++ b/src/phoebus_guibuilder/__init__.py @@ -6,8 +6,6 @@ Version number as calculated by poetry-dynamic-versioning """ -from importlib.metadata import version - -__version__ = version("phoebus_guibuilder") +from ._version import __version__ __all__ = ["__version__"] From 90bdd68412cbde65f9143053ee394e1461a1dc46 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Mon, 17 Feb 2025 10:59:30 +0000 Subject: [PATCH 12/20] Move env build to Dockerfile; Remove now unnecessary actions steps --- .devcontainer/devcontainer.json | 4 +-- .devcontainer/post-install.sh | 4 --- .../actions/install_requirements/action.yml | 29 +++++++--------- Dockerfile | 34 +++++++++---------- pyproject.toml | 2 +- 5 files changed, 31 insertions(+), 42 deletions(-) delete mode 100644 .devcontainer/post-install.sh diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 656c1550..fb0d9cd1 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -58,7 +58,5 @@ "--security-opt=label=disable" ], // Mount the parent as /workspaces so we can pip install peers as editable - "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", - // After the container is created, install the python project in editable form - "postCreateCommand": "bash ./.devcontainer/post-install.sh" + "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind" } diff --git a/.devcontainer/post-install.sh b/.devcontainer/post-install.sh deleted file mode 100644 index 637f49c1..00000000 --- a/.devcontainer/post-install.sh +++ /dev/null @@ -1,4 +0,0 @@ -pdm python install -pdm use -f .venv -pip install --upgrade pip -pdm install -G dev diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml index dd81f676..ccca2dbc 100644 --- a/.github/actions/install_requirements/action.yml +++ b/.github/actions/install_requirements/action.yml @@ -4,9 +4,6 @@ inputs: python-version: description: Python version to install, default is from Dockerfile default: "dev" - poetry-version: - description: Poetry version to install, from pyproject.toml - default: $(yq '.project."optional-dependencies".dev[] | select(. | contains("poetry"))' pyproject.toml | grep -oE '[0-9]+\.[0-9]+\.[0-9]+') runs: using: composite @@ -20,25 +17,23 @@ runs: echo "PYTHON_VERSION=$PYTHON_VERSION" >> "$GITHUB_ENV" shell: bash - - name: Setup python - uses: actions/setup-python@v5 + - name: Setup PDM + uses: pdm-project/setup-pdm@v4 with: python-version: ${{ env.PYTHON_VERSION }} - - name: Install Poetry - uses: abatilo/actions-poetry@v2 - with: - poetry-version: ${{ inputs.poetry-version }} - - # - name: Install Poetry with specific version from pyproject.toml - # uses: snok/install-poetry@v1 - # with: - # poetry-version-from-pyproject-toml: true - - name: Install dependencies - run: poetry install --no-root + run: pdm sync -d -G dev shell: bash - name: Report what was installed - run: poetry show + run: pdm list + shell: bash + + - name: Add venv path to Github environment + run: echo "VENV_PATH=$(pdm venv activate | sed 's/.*source //; s|/bin/activate||')" >> $GITHUB_ENV + shell: bash + + - name: Add venv path to Github Path + run: echo "${{ env.VENV_PATH }}/bin:$PATH" >> $GITHUB_PATH shell: bash diff --git a/Dockerfile b/Dockerfile index 0bef1506..e21ae48e 100644 --- a/Dockerfile +++ b/Dockerfile @@ -10,25 +10,25 @@ RUN curl -sSL https://raw.githubusercontent.com/pdm-project/pdm/main/install-pdm RUN wget https://github.com/mikefarah/yq/releases/latest/download/yq_linux_amd64 -O /usr/bin/yq \ && chmod +x /usr/bin/yq -COPY . ./ -COPY src/phoebus_guibuilder ./phoebus_guibuilder -RUN touch README.md - -# # Set up a virtual environment and put it in PATH -# RUN python -m venv /venv -# ENV PATH=/venv/bin:$PATH - # # The build stage installs the context into the venv -# FROM developer AS build -# COPY . /context -# WORKDIR /context -# RUN touch dev-requirements.txt && pip install -c dev-requirements.txt . +FROM developer AS build +# install PDM +RUN pip install -U pdm +# disable update check +ENV PDM_CHECK_UPDATE=false +# copy files +COPY pyproject.toml pdm.lock README.md LICENSE /project/ +COPY src/ /project/src + +# install dependencies and project into the local packages directory +WORKDIR /project +RUN pdm install --check --prod --no-editable -# # The runtime stage copies the built venv into a slim runtime container -# FROM python:${PYTHON_VERSION}-slim AS runtime -# # Add apt-get system dependecies for runtime here if needed -# COPY --from=build /venv/ /venv/ -# ENV PATH=/venv/bin:$PATH +# The runtime stage copies the built venv into a slim runtime container +FROM python:${PYTHON_VERSION}-slim AS runtime +# Add apt-get system dependecies for runtime here if needed +COPY --from=build /project/.venv/ /project/.venv +ENV PATH="/project/.venv/bin:$PATH" # change this entrypoint if it is not the same as the repo ENTRYPOINT ["phoebus-guibuilder"] diff --git a/pyproject.toml b/pyproject.toml index 2932b9c7..e733506d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -39,7 +39,7 @@ optional-dependencies = { dev = [ "types-mock", "types-pyyaml", ] } -scripts = { phoebus_guibuilder = "phoebus_guibuilder.__main__:main" } +scripts = { phoebus-guibuilder = "phoebus_guibuilder.__main__:main" } [build-system] requires = ["pdm-backend"] From a0340963365d48520be8e4d3ef7c21eed7e8bdb4 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Fri, 21 Feb 2025 13:22:53 +0000 Subject: [PATCH 13/20] Create devcontainer venv with post-install.sh script --- .devcontainer/devcontainer.json | 6 ++++-- .devcontainer/post-install.sh | 5 +++++ 2 files changed, 9 insertions(+), 2 deletions(-) create mode 100644 .devcontainer/post-install.sh diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index fb0d9cd1..7f7c2008 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -3,7 +3,7 @@ "name": "Python 3 Developer Container", "build": { "dockerfile": "../Dockerfile", - "target": "developer" + "target": "build" }, "remoteEnv": { // Allow X11 apps to run inside the container @@ -58,5 +58,7 @@ "--security-opt=label=disable" ], // Mount the parent as /workspaces so we can pip install peers as editable - "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind" + "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", + // After the container is created, install the pdm env + "postCreateCommand": "bash .devcontainer/post-install.sh" } diff --git a/.devcontainer/post-install.sh b/.devcontainer/post-install.sh new file mode 100644 index 00000000..47da4035 --- /dev/null +++ b/.devcontainer/post-install.sh @@ -0,0 +1,5 @@ +pip install --upgrade pip +pdm python install +pdm venv create --force +pdm use -f .venv +pdm install -G dev From b9aa43b962794f67eea69abaedcc9c0cbe669024 Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Fri, 7 Feb 2025 16:53:27 +0000 Subject: [PATCH 14/20] Seperated dataclasses in datatypes from guibuilder Rebasing phoebus class redesign with changes made to testing and dependencies. --- .pdm-python | 1 + .python-version | 1 + src/phoebus_guibuilder/__init__.py | 5 +- src/phoebus_guibuilder/__main__.py | 7 +- src/phoebus_guibuilder/datatypes.py | 67 +++++++ src/phoebus_guibuilder/guibuilder.py | 288 ++++++++++++--------------- tests/test_objects.py | 9 +- 7 files changed, 204 insertions(+), 174 deletions(-) create mode 100644 .pdm-python create mode 100644 .python-version create mode 100644 src/phoebus_guibuilder/datatypes.py diff --git a/.pdm-python b/.pdm-python new file mode 100644 index 00000000..e3ba2ef2 --- /dev/null +++ b/.pdm-python @@ -0,0 +1 @@ +/workspaces/guibuilder/.venv/bin/python \ No newline at end of file diff --git a/.python-version b/.python-version new file mode 100644 index 00000000..e4fba218 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/src/phoebus_guibuilder/__init__.py b/src/phoebus_guibuilder/__init__.py index 8df6208a..a80af651 100644 --- a/src/phoebus_guibuilder/__init__.py +++ b/src/phoebus_guibuilder/__init__.py @@ -8,4 +8,7 @@ from ._version import __version__ -__all__ = ["__version__"] +from phoebus_guibuilder.datatypes import Beamline, Component, Entry +from phoebus_guibuilder.guibuilder import Guibuilder + +__all__ = ["__version__", "Beamline", "Component", "Entry", "Guibuilder"] diff --git a/src/phoebus_guibuilder/__main__.py b/src/phoebus_guibuilder/__main__.py index c73b9103..14d8b93d 100644 --- a/src/phoebus_guibuilder/__main__.py +++ b/src/phoebus_guibuilder/__main__.py @@ -2,8 +2,10 @@ from argparse import ArgumentParser from collections.abc import Sequence +from fileinput import filename -from . import __version__, guibuilder +from . import __version__ +from .guibuilder import Guibuilder __all__ = ["main"] @@ -20,7 +22,8 @@ def main(args: Sequence[str] | None = None) -> None: ) _args = parser.parse_args(args) - guibuilder.main(_args.filename) + gb = Guibuilder(_args.filename) + gb.extract_from_create_gui() if __name__ == "__main__": diff --git a/src/phoebus_guibuilder/datatypes.py b/src/phoebus_guibuilder/datatypes.py new file mode 100644 index 00000000..0055eda3 --- /dev/null +++ b/src/phoebus_guibuilder/datatypes.py @@ -0,0 +1,67 @@ +import re +from dataclasses import dataclass + + +@dataclass +class Beamline: + dom: str + desc: str + + +@dataclass +class Entry: + type: str + DESC: str | None + P: str + M: str | None + R: str | None + + +@dataclass +class Component: + name: str + desc: str + prefix: str + filename: str | None = None + + def __post_init__(self): + self._extract_p_and_r() + + def __repr__(self) -> str: + return f"Component(name={self.name}, desc={self.desc}, \ + prefix={self.P}, suffix={self.R}, filename={self.filename})" + + def _extract_p_and_r(self): + pattern = re.compile( + r""" + ^ # start of string + (?= # lookahead to ensure the following pattern matches + [A-Za-z0-9-]{14,16} # match 14 to 16 alphanumeric characters or hyphens + [:A-Za-z0-9]* # match zero or more colons or alphanumeric characters + [.A-Za-z0-9] # match a dot or alphanumeric character + ) + (?!.*--) # negative lookahead to ensure no double hyphens + (?!.*:\..) # negative lookahead to ensure no colon followed by a dot + ( # start of capture group 1 + (?:[A-Za-z0-9]{2,5}-){3} # match 2 to 5 alphanumeric characters followed + # by a hyphen, repeated 3 times + [\d]* # match zero or more digits + [^:]? # match zero or one non-colon character + ) + (?::([a-zA-Z0-9:]*))? # match zero or one colon followed by zero or more + # alphanumeric characters or colons (capture group 2) + (?:\.([a-zA-Z0-9]+))? # match zero or one dot followed by one or more + # alphanumeric characters (capture group 3) + $ # end of string + """, + re.VERBOSE, + ) + + match = re.match(pattern, self.prefix) + if match: + self.P: str = match.group(1) + self.R: str = match.group(2) + # TODO: Is this needed? + self.attribute: str | None = match.group(3) + else: + raise AttributeError(f"No valid PV prefix found for {self.name}.") diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index 50a9f643..5e6ecb5a 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -1,171 +1,129 @@ import os -import pprint import re -from dataclasses import dataclass +import sys import yaml -pp = pprint.PrettyPrinter() - - -@dataclass -class Beamline: - dom: str - desc: str - - -@dataclass -class Entry: - type: str - DESC: str | None - P: str - M: str | None - R: str | None - - -@dataclass -class Component: - name: str - desc: str - prefix: str - filename: str | None = None - - def __post_init__(self): - self._extract_p_and_r() - - def __repr__(self) -> str: - return f"Component(name={self.name}, desc={self.desc}, prefix={self.P}, \ -suffix={self.R}, filename={self.filename})" - - def _extract_p_and_r(self): - pattern = re.compile( - r""" - ^ # start of string - (?= # lookahead to ensure the following pattern matches - [A-Za-z0-9-]{14,16} # match 14 to 16 alphanumeric characters or hyphens - [:A-Za-z0-9]* # match zero or more colons or alphanumeric characters - [.A-Za-z0-9] # match a dot or alphanumeric character - ) - (?!.*--) # negative lookahead to ensure no double hyphens - (?!.*:\..) # negative lookahead to ensure no colon followed by a dot - ( # start of capture group 1 - (?:[A-Za-z0-9]{2,5}-){3} # match 2 to 5 alphanumeric characters followed - # by a hyphen, repeated 3 times - [\d]* # match zero or more digits - [^:]? # match zero or one non-colon character - ) - (?::([a-zA-Z0-9:]*))? # match zero or one colon followed by zero or more - # alphanumeric characters or colons (capture group 2) - (?:\.([a-zA-Z0-9]+))? # match zero or one dot followed by one or more - # alphanumeric characters (capture group 3) - $ # end of string - """, - re.VERBOSE, - ) - - match = re.match(pattern, self.prefix) - if match: - self.P: str = match.group(1) - self.R: str = match.group(2) - # TODO: Is this needed? - self.attribute: str | None = match.group(3) - else: - raise AttributeError(f"No valid PV prefix found for {self.name}.") - - -def main(filename: str): - components: list[Component] = [] # TODO Manage global lists better - - with open(filename) as f: - conf = yaml.safe_load(f) - - bl: dict[str, str] = conf["beamline"] - comps: dict[str, dict[str, str]] = conf["components"] - - beamline = Beamline(**bl) - - for key, comp in comps.items(): - components.append(Component(key, **comp)) - - print("BEAMLINE:") - pp.pprint(beamline) - - print("") - print("COMPONENTS") - pp.pprint(components) - - -##################################################### -# TODO Functionality should be in phoebusguibuilder class -# class Phoebusguibuilder(beamline: Beamline, components: list[Component]): - - -def find_services_folders(beamline: Beamline, components: list[Component]): - services_directory = ( - beamline.dom + "-services/services" - ) # TODO: rm hardcoding, map to services. - path = f"{services_directory}" - files = os.listdir(path) - - # Attempting to match the prefix to the files in the services directory - pattern = "^(.*)-(.*)-(.*)" - - for component in components: - domain: re.Match[str] | None = re.match(pattern, component.P) - assert domain is not None, "Empty Prefix Field" - - for file in files: - match = re.match(pattern, file) - if match: - if match.group(1) == domain.group(1).lower(): - if os.path.exists(f"{path}/{file}/config/ioc.yaml"): - valid_entities = extract_valid_entities( - ioc_yaml=f"{path}/{file}/config/ioc.yaml", - component=component, +from phoebus_guibuilder.datatypes import Beamline, Component, Entry + + +class Guibuilder: + """ + This class provides the functionality to process the required + create_gui.yaml file into screens mapped from ioc.yaml and + gui_map.yaml files. + + """ + + def __init__(self, create_gui: str): + self.components: list[Component] + + self.beamline: Beamline + + self.valid_entities: list[Entry] = [] + + self.create_gui: str = create_gui + + def extract_from_create_gui( + self, + ): + """ + Extracts from the create_gui.yaml file to generate + the required Beamline and components structures. + """ + + with open(self.create_gui) as f: + conf = yaml.safe_load(f) + + bl: dict[str, str] = conf["beamline"] + comps: dict[str, dict[str, str]] = conf["components"] + + self.beamline = Beamline(**bl) + + for key, comp in comps.items(): + self.components.append(Component(key, **comp)) + + def find_services_folders( + self, + ): + """ + Finds the related folders in the services directory + and extracts the related entites with the matching prefixes + """ + + services_directory = ( + self.beamline.dom + "-services/services" + ) # TODO: rm hardcoding, map to services. + path = f"{services_directory}" + files = os.listdir(path) + + # Attempting to match the prefix to the files in the services directory + pattern = "^(.*)-(.*)-(.*)" + + for component in self.components: + domain: re.Match[str] | None = re.match(pattern, component.P) + assert domain is not None, "Empty Prefix Field" + + for file in files: + match = re.match(pattern, file) + if match: + if match.group(1) == domain.group(1).lower(): + if os.path.exists(f"{path}/{file}/config/ioc.yaml"): + self.extract_valid_entities( + ioc_yaml=f"{path}/{file}/config/ioc.yaml", + component=component, + ) + else: + print(f"No ioc.yaml file for service: {file}") + + def extract_valid_entities(self, ioc_yaml: str, component: Component): + """ + Extracts the entities in ioc.yaml matching the defined prefix + """ + + entities: list[dict[str, str]] = [] + component_match = f"{component.P}:{component.R}" + + with open(ioc_yaml) as ioc: + conf = yaml.safe_load(ioc) + entities = conf["entities"] + for entity in entities: + if ( + "P" in entity.keys() and entity["P"] == component_match + ): # the suffix could be M, could be R + self.valid_entities.append( + Entry( + type=entity["type"], + DESC=None, + P=entity["P"], + M=None, + R=None, ) - return valid_entities - else: - print(f"No ioc.yaml file for service: {file}") - - -def extract_valid_entities(ioc_yaml: str, component: Component) -> list[Entry]: - print(type(ioc_yaml)) - entities: list[dict[str, str]] = [] - valid_entities: list[Entry] = [] - component_match = f"{component.P}:{component.R}" - with open(ioc_yaml) as ioc: - conf = yaml.safe_load(ioc) - entities = conf["entities"] - for entity in entities: - if ( - "P" in entity.keys() and entity["P"] == component_match - ): # the suffix could be M, could be R - valid_entities.append( - Entry(type=entity["type"], DESC=None, P=entity["P"], M=None, R=None) - ) - - return valid_entities - - -def gui_map(entrys: list[Entry]): - gui_map = "blgui/BLGuiApp/opi/bob/gui_map.yaml" - - with open(gui_map) as map: - conf = yaml.safe_load(map) - - for entry in entrys: - print(entry.type) - if conf[entry.type]: - print( - conf[entry.type]["file"] - ) # Find correct .bob file, and injet macros - # TODO: create a copy of the file, and replace the required macros - # TODO: return the file to guibuilder - - else: - print("No BOB available") - - -# find_services_folders() -# print(valid_entities) -# gui_map(valid_entities) + ) + + def gui_map(self, entrys: list[Entry]): + """ + Maps the valid entities from the ioc.yaml file + to the required screen in gui_map.yaml + """ + + gui_map = "/BLGui/BLGuiApp/opi/bob/gui_map.yaml" + + with open(gui_map) as map: + conf = yaml.safe_load(map) + + for entry in entrys: + print(entry.type) + if conf[entry.type]: + print( + conf[entry.type]["file"] + ) # Find correct .bob file, and injet macros + # TODO: create a copy of the file, and replace the required macros + # TODO: return the file to guibuilder + + else: + print("No BOB available") + + +if __name__ == "__main__": + Guibuilder(sys.argv[1]) diff --git a/tests/test_objects.py b/tests/test_objects.py index acb0357a..e2ee0f80 100644 --- a/tests/test_objects.py +++ b/tests/test_objects.py @@ -1,6 +1,6 @@ import pytest -from phoebus_guibuilder.guibuilder import Beamline, Component +from phoebus_guibuilder.datatypes import Beamline, Component @pytest.fixture @@ -28,11 +28,8 @@ def test_component_object(component): def test_component_repr(component): - assert ( - str(component) - == "Component(name=TESTDEV, desc=Test Device, \ -prefix=BL01T-EA-TEST-02, suffix=None, filename=None)" - ) + assert (str(component)== "Component(name=TESTDEV, desc=Test Device, \ + prefix=BL01T-EA-TEST-02, suffix=None, filename=None)") def test_component_bad_prefix(): From 3bb50a352ae9a3634f0388d10bc91bca9901d0ad Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Thu, 20 Feb 2025 12:12:55 +0000 Subject: [PATCH 15/20] guibuilder.py: create_gui to create_gui_yaml, removed __main__, linting with ruff --- src/phoebus_guibuilder/__init__.py | 4 ++-- src/phoebus_guibuilder/__main__.py | 1 - src/phoebus_guibuilder/guibuilder.py | 9 ++------- 3 files changed, 4 insertions(+), 10 deletions(-) diff --git a/src/phoebus_guibuilder/__init__.py b/src/phoebus_guibuilder/__init__.py index a80af651..e2e97e62 100644 --- a/src/phoebus_guibuilder/__init__.py +++ b/src/phoebus_guibuilder/__init__.py @@ -6,9 +6,9 @@ Version number as calculated by poetry-dynamic-versioning """ -from ._version import __version__ - from phoebus_guibuilder.datatypes import Beamline, Component, Entry from phoebus_guibuilder.guibuilder import Guibuilder +from ._version import __version__ + __all__ = ["__version__", "Beamline", "Component", "Entry", "Guibuilder"] diff --git a/src/phoebus_guibuilder/__main__.py b/src/phoebus_guibuilder/__main__.py index 14d8b93d..a62c8db1 100644 --- a/src/phoebus_guibuilder/__main__.py +++ b/src/phoebus_guibuilder/__main__.py @@ -2,7 +2,6 @@ from argparse import ArgumentParser from collections.abc import Sequence -from fileinput import filename from . import __version__ from .guibuilder import Guibuilder diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index 5e6ecb5a..fb65183b 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -1,6 +1,5 @@ import os import re -import sys import yaml @@ -15,14 +14,14 @@ class Guibuilder: """ - def __init__(self, create_gui: str): + def __init__(self, create_gui_yaml: str): self.components: list[Component] self.beamline: Beamline self.valid_entities: list[Entry] = [] - self.create_gui: str = create_gui + self.create_gui: str = create_gui_yaml def extract_from_create_gui( self, @@ -123,7 +122,3 @@ def gui_map(self, entrys: list[Entry]): else: print("No BOB available") - - -if __name__ == "__main__": - Guibuilder(sys.argv[1]) From cd080173f87cdfe02de387d0a427dc34b5990d92 Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Wed, 26 Feb 2025 13:42:30 +0000 Subject: [PATCH 16/20] Added git pull to guibuilder, and test --- .gitmodules | 8 +------- .pdm-python | 2 +- blgui | 1 - p47-services | 1 - src/phoebus_guibuilder/guibuilder.py | 23 +++++++++++++++++++---- tests/test_guibuilder.py | 25 +++++++++++++++++++++++++ 6 files changed, 46 insertions(+), 14 deletions(-) delete mode 160000 blgui delete mode 160000 p47-services create mode 100644 tests/test_guibuilder.py diff --git a/.gitmodules b/.gitmodules index 0be246e9..8b137891 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,7 +1 @@ -[submodule "blgui"] - path = blgui - url = git@gitlab.diamond.ac.uk:controls/support/blgui.git - branch = BLGuiYaml -[submodule "p47-services"] - path = p47-services - url = https://github.com/epics-containers/p47-services.git + diff --git a/.pdm-python b/.pdm-python index e3ba2ef2..f60efe3b 100644 --- a/.pdm-python +++ b/.pdm-python @@ -1 +1 @@ -/workspaces/guibuilder/.venv/bin/python \ No newline at end of file +/workspaces/phoebus-guibuilder/.venv/bin/python \ No newline at end of file diff --git a/blgui b/blgui deleted file mode 160000 index 4eac6444..00000000 --- a/blgui +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 4eac6444e110cd60aaaee3b51453ec8cb0bbb9fd diff --git a/p47-services b/p47-services deleted file mode 160000 index f4bf3a6d..00000000 --- a/p47-services +++ /dev/null @@ -1 +0,0 @@ -Subproject commit f4bf3a6d315061cc6a5289a17a0fc64b529b2f0c diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index fb65183b..02704a2d 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -15,7 +15,7 @@ class Guibuilder: """ def __init__(self, create_gui_yaml: str): - self.components: list[Component] + self.components: list[Component] = [] self.beamline: Beamline @@ -33,7 +33,6 @@ def extract_from_create_gui( with open(self.create_gui) as f: conf = yaml.safe_load(f) - bl: dict[str, str] = conf["beamline"] comps: dict[str, dict[str, str]] = conf["components"] @@ -49,7 +48,7 @@ def find_services_folders( Finds the related folders in the services directory and extracts the related entites with the matching prefixes """ - + self.git_pull_submodules(self.beamline.dom) services_directory = ( self.beamline.dom + "-services/services" ) # TODO: rm hardcoding, map to services. @@ -106,7 +105,7 @@ def gui_map(self, entrys: list[Entry]): to the required screen in gui_map.yaml """ - gui_map = "/BLGui/BLGuiApp/opi/bob/gui_map.yaml" + gui_map = "./GuiMap/gui_map.yaml" with open(gui_map) as map: conf = yaml.safe_load(map) @@ -122,3 +121,19 @@ def gui_map(self, entrys: list[Entry]): else: print("No BOB available") + + def git_pull_submodules(self, dom: str): + services_repo = ( + f"git submodule add git@github.com:epics-containers/{dom}-services.git" + ) + gui_map_repo = ( + "git submodule add git@github.com:adedamola-sode/techui-support.git" + ) + + submodules = "touch ./.gitmodules & git submodule sync" + rm_repos = f"rm -rf ./{dom}-services/ ./techui-support/" + + os.system(submodules) + os.system(rm_repos) + os.system(services_repo) + os.system(gui_map_repo) diff --git a/tests/test_guibuilder.py b/tests/test_guibuilder.py new file mode 100644 index 00000000..3f1adb14 --- /dev/null +++ b/tests/test_guibuilder.py @@ -0,0 +1,25 @@ +from phoebus_guibuilder.guibuilder import Guibuilder + + +def test_guibuilder(): + gb = Guibuilder("./example/create_gui.yaml") + gb.extract_from_create_gui() + print(gb.create_gui) + print("\n") + print(gb.components) + print("\n") + print(gb.beamline) + print("\n") + + +def test_gb_extract_services(): + gb = Guibuilder("./example/create_gui.yaml") + gb.extract_from_create_gui() + gb.find_services_folders() + print(gb.valid_entities) + + +def test_git_pull_submodules(): + gb = Guibuilder("./example/create_gui.yaml") + gb.extract_from_create_gui() + gb.git_pull_submodules(gb.beamline.dom) From e04cb73ce513a8da996ca59bfe705ab4c8e14629 Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Wed, 26 Feb 2025 15:05:23 +0000 Subject: [PATCH 17/20] Added submodules to gitignore, added git submodule add, added tests --- .gitignore | 4 +++ src/phoebus_guibuilder/guibuilder.py | 29 ++++++++++++----- tests/test_guibuilder.py | 47 +++++++++++++++++++--------- 3 files changed, 58 insertions(+), 22 deletions(-) diff --git a/.gitignore b/.gitignore index 0f33bf29..1fd923b4 100644 --- a/.gitignore +++ b/.gitignore @@ -69,3 +69,7 @@ lockfiles/ # ruff cache .ruff_cache/ + +# submodules +./techui-support/ +./*-services/ diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index 02704a2d..2ab97b5c 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -23,6 +23,8 @@ def __init__(self, create_gui_yaml: str): self.create_gui: str = create_gui_yaml + self.extract_from_create_gui() + def extract_from_create_gui( self, ): @@ -48,7 +50,8 @@ def find_services_folders( Finds the related folders in the services directory and extracts the related entites with the matching prefixes """ - self.git_pull_submodules(self.beamline.dom) + self.git_pull_submodules() + services_directory = ( self.beamline.dom + "-services/services" ) # TODO: rm hardcoding, map to services. @@ -73,6 +76,7 @@ def find_services_folders( ) else: print(f"No ioc.yaml file for service: {file}") + os.system(f"rm -rf ./{self.beamline.dom}-services/ ./techui-support/") def extract_valid_entities(self, ioc_yaml: str, component: Component): """ @@ -98,6 +102,8 @@ def extract_valid_entities(self, ioc_yaml: str, component: Component): R=None, ) ) + if "M" in entity.keys(): + self.valid_entities[-1].M = entity["M"] def gui_map(self, entrys: list[Entry]): """ @@ -122,18 +128,25 @@ def gui_map(self, entrys: list[Entry]): else: print("No BOB available") - def git_pull_submodules(self, dom: str): - services_repo = ( - f"git submodule add git@github.com:epics-containers/{dom}-services.git" - ) + def git_pull_submodules(self): + """ + Method which helps pull the required modules in as + submodules and removes all traces of submodules. + """ + services_repo = f"git submodule add --force\ + git@github.com:epics-containers/{self.beamline.dom}-services.git" gui_map_repo = ( - "git submodule add git@github.com:adedamola-sode/techui-support.git" + "git submodule add --force git@github.com:adedamola-sode/techui-support.git" ) - submodules = "touch ./.gitmodules & git submodule sync" - rm_repos = f"rm -rf ./{dom}-services/ ./techui-support/" + submodules = "echo ''> .gitmodules & git submodule sync" + rm_repos = f"rm -rf ./{self.beamline.dom}-services/ ./techui-support/" + unstage = f"git restore --staged .gitmodules\ + {self.beamline.dom}-services techui-support" os.system(submodules) os.system(rm_repos) os.system(services_repo) os.system(gui_map_repo) + os.system(unstage) + os.system(submodules) diff --git a/tests/test_guibuilder.py b/tests/test_guibuilder.py index 3f1adb14..4cc99761 100644 --- a/tests/test_guibuilder.py +++ b/tests/test_guibuilder.py @@ -1,25 +1,44 @@ +import os + from phoebus_guibuilder.guibuilder import Guibuilder def test_guibuilder(): - gb = Guibuilder("./example/create_gui.yaml") - gb.extract_from_create_gui() - print(gb.create_gui) - print("\n") - print(gb.components) - print("\n") - print(gb.beamline) - print("\n") + gb = Guibuilder("./example/create_gui.yaml") # + assert gb.beamline.dom == "p47" + assert gb.beamline.desc == "Test Beamline" + assert gb.components[0].name == "fshtr" + assert gb.components[0].desc == "Fast Shutter" + assert gb.components[0].P == "BL47P-EA-FSHTR-01" + assert gb.components[0].R is None + assert gb.components[0].attribute is None -def test_gb_extract_services(): +def test_git_pull_submodules(): gb = Guibuilder("./example/create_gui.yaml") gb.extract_from_create_gui() - gb.find_services_folders() - print(gb.valid_entities) + gb.git_pull_submodules() + services_directory = f"./{gb.beamline.dom}-services" + techui_directory = "./techui-support" + assert os.path.isdir(services_directory) + assert os.path.isdir(techui_directory) -def test_git_pull_submodules(): +def test_gb_extract_services(): gb = Guibuilder("./example/create_gui.yaml") - gb.extract_from_create_gui() - gb.git_pull_submodules(gb.beamline.dom) + gb.find_services_folders() + assert gb.valid_entities[0].type == "pmac.autohome" + assert gb.valid_entities[0].DESC is None + assert gb.valid_entities[0].P == "BL47P-MO-MAP-01:STAGE" + assert gb.valid_entities[0].M is None + assert gb.valid_entities[0].R is None + assert gb.valid_entities[1].type == "pmac.dls_pmac_asyn_motor" + assert gb.valid_entities[1].DESC is None + assert gb.valid_entities[1].P == "BL47P-MO-MAP-01:STAGE" + assert gb.valid_entities[1].M == ":X" + assert gb.valid_entities[1].R is None + assert gb.valid_entities[2].type == "pmac.dls_pmac_asyn_motor" + assert gb.valid_entities[2].DESC is None + assert gb.valid_entities[2].P == "BL47P-MO-MAP-01:STAGE" + assert gb.valid_entities[2].M == ":A" + assert gb.valid_entities[1].R is None From 9c82477d483b900df02a2940ddd539a73a2866ac Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Wed, 26 Feb 2025 15:08:36 +0000 Subject: [PATCH 18/20] Changed ssh git pull into https git pull --- src/phoebus_guibuilder/guibuilder.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index 2ab97b5c..a9ce82bf 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -134,10 +134,8 @@ def git_pull_submodules(self): submodules and removes all traces of submodules. """ services_repo = f"git submodule add --force\ - git@github.com:epics-containers/{self.beamline.dom}-services.git" - gui_map_repo = ( - "git submodule add --force git@github.com:adedamola-sode/techui-support.git" - ) + https://github.com:epics-containers/{self.beamline.dom}-services.git" + gui_map_repo = "git submodule add --force https://github.com:adedamola-sode/techui-support.git" submodules = "echo ''> .gitmodules & git submodule sync" rm_repos = f"rm -rf ./{self.beamline.dom}-services/ ./techui-support/" From 2763b6eb10f045e9745e9e04e76d2eadec1dce8a Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Wed, 26 Feb 2025 15:23:49 +0000 Subject: [PATCH 19/20] Removed recursive submodules --- .github/workflows/_test.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index 92be39b2..552b29d0 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -26,7 +26,6 @@ jobs: uses: actions/checkout@v4 with: # Need this to get version number from last tag - submodules: recursive fetch-depth: 0 - if: inputs.python-version == 'dev' From 4295f673a680afc12c2065953ca7190fb6e36e30 Mon Sep 17 00:00:00 2001 From: "Sode, Adedamola (DLSLtd,RAL,LSCI)" Date: Wed, 26 Feb 2025 15:32:26 +0000 Subject: [PATCH 20/20] Fixed issues with git urls --- src/phoebus_guibuilder/guibuilder.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/phoebus_guibuilder/guibuilder.py b/src/phoebus_guibuilder/guibuilder.py index a9ce82bf..227999aa 100644 --- a/src/phoebus_guibuilder/guibuilder.py +++ b/src/phoebus_guibuilder/guibuilder.py @@ -134,8 +134,8 @@ def git_pull_submodules(self): submodules and removes all traces of submodules. """ services_repo = f"git submodule add --force\ - https://github.com:epics-containers/{self.beamline.dom}-services.git" - gui_map_repo = "git submodule add --force https://github.com:adedamola-sode/techui-support.git" + https://github.com/epics-containers/{self.beamline.dom}-services.git" + gui_map_repo = "git submodule add --force https://github.com/adedamola-sode/techui-support.git" submodules = "echo ''> .gitmodules & git submodule sync" rm_repos = f"rm -rf ./{self.beamline.dom}-services/ ./techui-support/"