Skip to content

N and U never matched #3

@irunonayran

Description

@irunonayran

with -x asm10 (annotate_haplotype.py:153), minimap never finds the short sequences for HLA-N/U in my use cases.

The reason lies in the combination of -A1 and -s200 . I would suggest adding -s100 to lower the minimum score.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions