Mono-repository-structure

[frigusgulo]

Ive been thinking of a few ways to "balkanize" this code base. I think the most practical way to do this is to seperate functionality into 3 seperate "packages".

1. parsing logic (i.e. sonardyne processing, novatel processing, tiledb routing)
2. workflow logic, so our workspace management and pipeline management logic gets seperated and treats parsing logic as a dependency
3. command line logic, this becomes its own package as well.