Thank you for providing this comprehensive pipeline. It seems the 'perturbationAnalysis.R' script used in in 'cNMF_Perturb-seq_analysis.smk' is missing from the repository. Could you clarify if the script is available elsewhere or suggest an alternative?
Thank you for providing this comprehensive pipeline. It seems the 'perturbationAnalysis.R' script used in in 'cNMF_Perturb-seq_analysis.smk' is missing from the repository. Could you clarify if the script is available elsewhere or suggest an alternative?