python exomePeak2_intersect.py tmp_file | cut -f 16 | awk
'BEGIN{OFS=FS="\t"}ARGIND==1{a[$0]=FNR}ARGIND==2{if(!($4 in a)){print $0}}' -
mRNA.bed | sort | uniq > calibrated.bed
hello,I am using your papers data to calibarate m6A peaks accrording to your m6A-analysis-pipeline, but i got a error when i calibrate exomePeak's m6A peaks, the information shows below:
/mnt/f/MeRIP-seq/7.exomepeak2-data$ python exomePeak2_intersect.py tmp_file | cut -f 16 |awk 'BEGIN{OFS=FS="\t"}ARGIND==1{a[$0]=FNR}ARGIND==2{if(!($4 in a)){print $0}}' WT_reps_intersect.bed |sort | uniq > calibrated-data/WT_calibrated.bed
Traceback (most recent call last):
File "exomePeak2_intersect.py", line 14, in
print (line)
BrokenPipeError: [Errno 32] Broken pipe
/mnt/f/MeRIP-seq/7.exomepeak2-data$
I don't know how to deal with it, thank you for your reply!
python exomePeak2_intersect.py tmp_file | cut -f 16 | awk
'BEGIN{OFS=FS="\t"}ARGIND==1{a[$0]=FNR}ARGIND==2{if(!($4 in a)){print $0}}' -
mRNA.bed | sort | uniq > calibrated.bed
hello,I am using your papers data to calibarate m6A peaks accrording to your m6A-analysis-pipeline, but i got a error when i calibrate exomePeak's m6A peaks, the information shows below:
/mnt/f/MeRIP-seq/7.exomepeak2-data$ python exomePeak2_intersect.py tmp_file | cut -f 16 |awk 'BEGIN{OFS=FS="\t"}ARGIND==1{a[$0]=FNR}ARGIND==2{if(!($4 in a)){print $0}}' WT_reps_intersect.bed |sort | uniq > calibrated-data/WT_calibrated.bed
Traceback (most recent call last):
File "exomePeak2_intersect.py", line 14, in
print (line)
BrokenPipeError: [Errno 32] Broken pipe
/mnt/f/MeRIP-seq/7.exomepeak2-data$
I don't know how to deal with it, thank you for your reply!