Data conversion for format required for GRoSS

[TD-lab-Wu]

Hi, how the input data from Lazaridis et al. (2014) used is GRoSS paper, can be converted into vcf file or format required for GRoSS.

I downloaded the corresponding data from https://reich.hms.harvard.edu/datasets

The data is in PACKEDANCESTRYMAP format
.geno Genotype file
.ind Individual file
.snp SNP file

Thank you!

[FerRacimo]

Hi, You can use the package glactools (https://grenaud.github.io/glactools/) to convert from the eigenstrat (packedancestrymap) format files into VCF format, then use the tutorial here to convert to GRoSS's native format: https://github.com/FerRacimo/GRoSS/blob/master/VCFtoGRoSS.md Cheers, Fernando

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On Sun, Jun 21, 2020 at 4:33 AM TD-lab-Wu ***@***.***> wrote: Hi, how the input data from Lazaridis et al. (2014) used is GRoSS paper, can be converted into vcf file or format required for GRoSS. I downloaded the corresponding data from https://reich.hms.harvard.edu/datasets The data is in PACKEDANCESTRYMAP format .geno Genotype file .ind Individual file .snp SNP file Thank you! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#5>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABLXSAWMCLDRXHZI3K6NMXDRXVWOZANCNFSM4ODUXYTQ> .

-- Fernando Racimo, PhD Assistant Professor of Population Genetics Globe Institute University of Copenhagen Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark