diff --git a/.gitignore b/.gitignore index 3d093df..10ec903 100644 --- a/.gitignore +++ b/.gitignore @@ -123,3 +123,6 @@ ENV/ # mkdocs build dir site/ +.claude/settings.local.json +.yarn/install-state.gz +audit.txt diff --git a/CHANGELOG.md b/CHANGELOG.md index dcfb16b..4402373 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,10 @@ # Changelog +## [Unreleased] +### Changed + - upgrade dependencies + - upgrade black to 26.x + ## [0.9.2] 2025-10-15 ### Changed - migrate to serverless 4 diff --git a/CLAUDE.md b/CLAUDE.md new file mode 100644 index 0000000..16c212a --- /dev/null +++ b/CLAUDE.md @@ -0,0 +1,91 @@ +# CLAUDE.md + +This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository. + +## Project Overview + +A GraphQL API for querying and analyzing NZSHM (New Zealand Seismic Hazard Model) composite inversion solutions. Built with Flask + Graphene, deployed as an AWS Lambda function via the Serverless Framework using Docker/ECR containers. + +## Common Commands + +### Setup +```bash +corepack enable && yarn set version berry +yarn install +poetry install +yarn sls dynamodb install # requires Java +``` + +### Running Locally +```bash +# Start local DynamoDB and S3 (separate terminals or backgrounded) +npx serverless dynamodb start --stage local +npx serverless s3 start + +# Start the API server +SLS_OFFLINE=1 poetry run yarn sls wsgi serve +``` + +### Testing +```bash +poetry run pytest # all tests +poetry run pytest tests/test_file.py # single file +poetry run pytest tests/test_file.py::test_function_name # single test +poetry run pytest -m "not slow" # skip slow tests +poetry run tox # full test suite via tox +``` + +### Linting & Formatting +```bash +poetry run tox -e lint # flake8 + mypy +poetry run tox -e format # isort + black +poetry run tox -e audit # pip-audit security scan +``` + +### Deploy +```bash +poetry export --without-hashes --format=requirements.txt > requirements.txt +BUILDX_NO_DEFAULT_ATTESTATIONS=1 yarn sls deploy --stage dev --region ap-southeast-2 +``` + +## Architecture + +### Request Flow +``` +API Gateway (API key auth) → Lambda handler (handler.py) + → Flask app (solvis_graphql_api.py) → GraphQL schema (schema.py, QueryRoot) + → Resolvers → cached.py (LRU-cached data loading) → solvis/nzshm libraries + → DynamoDB (metadata via pynamodb) + S3 (binary blobs via boto3) +``` + +### Key Modules + +- **`solvis_graphql_api/schema.py`** — Root GraphQL schema (`QueryRoot`). All top-level query fields defined here. +- **`solvis_graphql_api/composite_solution/`** — Core domain logic: + - `schema.py` — Pagination (relay cursors), filtering orchestration, connection builders + - `cached.py` — LRU-cached functions for loading CompositeSolution archives and running filtered queries. Performance-critical. + - `filtered_ruptures_args.py` — GraphQL input types for filtering + - `filter_set_logic_options.py` — Union/Intersection set operations for combining location and fault filters +- **`solvis_graphql_api/data_store/`** — DynamoDB + S3 dual-storage layer. `BinaryLargeObject` stores metadata in DynamoDB and binary data in S3. +- **`solvis_graphql_api/color_scale/`** — Matplotlib-based color scale generation for visualization +- **`solvis_graphql_api/scripts/cli.py`** — CLI for uploading composite solution archives to DynamoDB/S3 + +### Domain Dependencies +- **solvis** — Inversion solution analysis (rupture filtering, geometry, fault sections) +- **nzshm-model** — Source logic trees and model version data +- **nzshm-common** — Location database and shared utilities + +## Environment Variables + +| Variable | Purpose | Default | +|---|---|---| +| `SLS_OFFLINE` | Set to `1` for local serverless | — | +| `TESTING` | Set to `1` for test environment | — | +| `REGION` | AWS region | `us-east-1` | +| `DEPLOYMENT_STAGE` | Stage name (local/dev/test/prod) | `LOCAL` | +| `S3_BUCKET_NAME` | S3 bucket for blob storage | `nzshm22-solvis-graphql-api-local` | +| `LOGGING_CFG` | Path to logging YAML config | — | + +## CI/CD + +GitHub Actions workflow (`.github/workflows/dev.yml`) runs on PRs to `main` and `deploy-test`. Uses shared workflow from `GNS-Science/nshm-github-actions` for Python 3.12 test runs. diff --git a/README.md b/README.md index b9f0761..ce1cb26 100644 --- a/README.md +++ b/README.md @@ -43,7 +43,7 @@ yarn sls dynamodb install ``` # npx serverless dynamodb start --stage local &\ # npx serverless s3 start &\ -SLS_OFFLINE=1 poetry run yarn sls serverless wsgi serve +SLS_OFFLINE=1 poetry run yarn sls wsgi serve ``` then diff --git a/poetry.lock b/poetry.lock index 93cb761..312df93 100644 --- a/poetry.lock +++ b/poetry.lock @@ -33,14 +33,14 @@ trio = ["trio (>=0.31.0) ; python_version < \"3.10\"", "trio (>=0.32.0) ; python [[package]] name = "authlib" -version = "1.6.6" +version = "1.6.9" description = "The ultimate Python library in building OAuth and OpenID Connect servers and clients." optional = false python-versions = ">=3.9" groups = ["dev"] files = [ - {file = "authlib-1.6.6-py2.py3-none-any.whl", hash = "sha256:7d9e9bc535c13974313a87f53e8430eb6ea3d1cf6ae4f6efcd793f2e949143fd"}, - 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application library." optional = false python-versions = ">=3.9" groups = ["main", "dev"] files = [ - {file = "werkzeug-3.1.4-py3-none-any.whl", hash = "sha256:2ad50fb9ed09cc3af22c54698351027ace879a0b60a3b5edf5730b2f7d876905"}, - {file = "werkzeug-3.1.4.tar.gz", hash = "sha256:cd3cd98b1b92dc3b7b3995038826c68097dcb16f9baa63abe35f20eafeb9fe5e"}, + {file = "werkzeug-3.1.6-py3-none-any.whl", hash = "sha256:7ddf3357bb9564e407607f988f683d72038551200c704012bb9a4c523d42f131"}, + {file = "werkzeug-3.1.6.tar.gz", hash = "sha256:210c6bede5a420a913956b4791a7f4d6843a43b6fcee4dfa08a65e93007d0d25"}, ] [package.dependencies] diff --git a/setup.cfg b/setup.cfg index 517e313..5aab443 100644 --- a/setup.cfg +++ b/setup.cfg @@ -109,6 +109,31 @@ commands = poetry build +[testenv:smoke] +# Smoke test that fires up the API and runs a simple query against it. +# call with +# poetry run tox -e smoke +allowlist_externals = + bash + curl +deps = + boto3 +setenv = + PYTHONPATH = {toxinidir} + TESTING = 1 +commands = + bash -c '\ + flask --app solvis_graphql_api.solvis_graphql_api:app run --port 5099 & \ + FLASK_PID=$!; \ + for i in 1 2 3 4 5; do curl -so /dev/null http://localhost:5099/graphql 2>/dev/null && break; sleep 1; done; \ + RESPONSE=$(curl -sf -X POST http://localhost:5099/graphql \ + -H "Content-Type: application/json" \ + -d '\''{"query": "{ about }"}'\'' ); \ + kill $FLASK_PID 2>/dev/null; \ + echo "$RESPONSE"; \ + echo "$RESPONSE" | grep -q "solvis_graphql_api" \ + ' + [tool:pytest] markers = slow: slow tests \ No newline at end of file