diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 643cdbb..32566f2 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.3.1 +current_version = 1.3.2 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(-(?P.*)-(?P\d+))? diff --git a/.gitignore b/.gitignore index 08cfdba..f71be91 100644 --- a/.gitignore +++ b/.gitignore @@ -115,3 +115,5 @@ ENV/ # mkdocs build dir site/ +audit.txt +.claude/settings.local.json diff --git a/CHANGELOG.md b/CHANGELOG.md index 81181ff..cdf9583 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## [1.3.2] 2026-03-20 + +### Changed + - Pandas 3 is explicitly not supported yet + - upgraded a number of dependencies + ## [1.3.1] 2026-01-20 ### Changed diff --git a/CLAUDE.md b/CLAUDE.md new file mode 100644 index 0000000..699cd54 --- /dev/null +++ b/CLAUDE.md @@ -0,0 +1,72 @@ +# CLAUDE.md + +This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository. + +## Project Overview + +Solvis is a Python library for analysis of OpenSHA Modular Fault System Solution files, used for New Zealand National Seismic Hazard Model (NSHM) research. License: AGPL-3.0-or-later. + +## Development Commands + +### Setup +``` +pyenv local 3.10 +poetry env use 3.10 +poetry sync --all-groups +``` + +### Testing +- `poetry run pytest` — run all tests +- `poetry run pytest test/.py` — run a single test file +- `poetry run pytest -k ` — filter tests by name +- `poetry run tox` — full QA suite (tests across Python 3.10/3.11/3.12, lint, format) +- `poetry run tox -e py310` — tests with coverage for a specific Python version + +### Code Quality +- `poetry run tox -e format` — apply formatting (black + isort) +- `poetry run tox -e lint` — lint and type checking (flake8 + mypy) +- `poetry run black solvis test` — format code (line-length 120, skip string normalization) +- `poetry run isort solvis test` — sort imports +- `poetry run mypy solvis test` — type checking (uses pandera plugin) + +### Documentation +- `mkdocs serve` — preview docs locally + +## Architecture + +### Core Classes (solvis/solution/) +- **InversionSolution** (`inversion_solution/`) — interface to a single OpenSHA inversion solution archive (zip file). Loads ruptures, fault sections, rates as DataFrames. +- **FaultSystemSolution** (`fault_system_solution/`) — aggregates multiple InversionSolutions sharing the same rupture set. +- **CompositeSolution** (`composite_solution.py`) — container for a complete NSHM model and its logic tree. + +All three are exported from `solvis/__init__.py`. + +### Filters (solvis/filter/) +Chainable, set-like filter classes for selecting ruptures: +- `RuptureIdFilter` — filter by rupture ID +- `ParentFaultIdFilter` — filter by parent fault +- `SubsectionIdFilter` — filter by subsection +- All inherit from `ChainableSetBase` and support set operations (union, intersection, difference). + +### Key Modules +- `solvis/solution/dataframe_models.py` — Pandera DataFrameModel schemas for runtime DataFrame validation +- `solvis/solution/solution_participation.py` — rupture participation rate calculations +- `solvis/solution/solution_surfaces_builder.py` — geometry building for fault surfaces +- `solvis/solution/typing.py` — Protocol definitions for interfaces +- `solvis/geometry.py` — geometric calculations (Shapely-based; optional pyvista for 3D) +- `solvis/utils.py` — utilities including MFD histogram generation and GeoJSON export +- `solvis/scripts/cli.py` — Click-based CLI + +### Dependencies +Core: geopandas, pandas, pandera, pyproj, nzshm-common, nzshm-model. Optional: pyvista (vtk extra), shapely (demo extra). + +## Code Conventions + +- **Line length:** 120 characters +- **Docstrings:** Google style +- **Formatting:** black (skip-string-normalization) + isort +- **Linting:** flake8 (max-complexity 18) + mypy with pandera plugin +- **Test framework:** pytest with markers: `slow`, `performance`, `TODO_check_values` +- **Test fixtures:** test archives in `test/fixtures/`; fixtures defined in `test/conftest.py` +- **DataFrame validation:** Use Pandera DataFrameModel schemas for any new DataFrame structures +- **TYPE_CHECKING guards:** Used throughout for imports only needed by type checkers diff --git a/poetry.lock b/poetry.lock index 25ec04d..4e50364 100644 --- a/poetry.lock +++ b/poetry.lock @@ -60,16 +60,28 @@ files = [ {file = "async_timeout-5.0.1.tar.gz", hash = "sha256:d9321a7a3d5a6a5e187e824d2fa0793ce379a202935782d555d6e9d2735677d3"}, ] +[[package]] +name = "attrs" +version = "26.1.0" +description = "Classes Without Boilerplate" 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>9.4.1,<9.6.0" +vtk = ">=9.2.2,<9.4.0 || >9.4.0,<9.4.1 || >9.4.1,<9.7.0" [package.extras] all = ["pyvista[colormaps,io,jupyter]"] colormaps = ["cmcrameri", "cmocean", "colorcet"] io = ["imageio", "meshio (>=5.2)"] -jupyter = ["ipywidgets", "jupyter-server-proxy", "nest_asyncio", "trame (>=2.5.2)", "trame-client (>=2.12.7)", "trame-server (>=2.11.7)", "trame-vtk (>=2.5.8)", "trame-vuetify (>=2.3.1)"] +jupyter = ["ipywidgets", "jupyter-server-proxy", "nest-asyncio2", "trame (>=2.5.2)", "trame-client (>=2.12.7)", "trame-server (>=2.11.7,<3.7.dev0 || >3.8.0)", "trame-vtk (!=2.10.3,!=2.11.*)", "trame-vtk (>=2.5.8,<2.10.3)", "trame-vuetify (>=2.3.1)"] [[package]] name = "pyyaml" @@ -4630,7 +4724,7 @@ version = "14.2.0" description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" optional = false python-versions = ">=3.8.0" -groups = ["dev"] +groups = ["main", "dev"] files = [ {file = "rich-14.2.0-py3-none-any.whl", hash = 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= ">=3.8" -groups = ["dev"] +groups = ["main", "dev"] files = [ {file = "tomli-2.4.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:b5ef256a3fd497d4973c11bf142e9ed78b150d36f5773f1ca6088c230ffc5867"}, {file = "tomli-2.4.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:5572e41282d5268eb09a697c89a7bee84fae66511f87533a6f88bd2f7b652da9"}, @@ -4964,6 +5077,7 @@ files = [ {file = "tomli-2.4.0-py3-none-any.whl", hash = "sha256:1f776e7d669ebceb01dee46484485f43a4048746235e683bcdffacdf1fb4785a"}, {file = "tomli-2.4.0.tar.gz", hash = "sha256:aa89c3f6c277dd275d8e243ad24f3b5e701491a860d5121f2cdd399fbb31fc9c"}, ] +markers = {main = "python_version == \"3.10\""} [[package]] name = "tomli-w" @@ -5054,14 +5168,14 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0, [[package]] name = "typeguard" -version = "4.4.4" +version = "4.5.1" description = "Run-time type checker for Python" optional = false python-versions = ">=3.9" groups = ["main"] files = [ - {file = "typeguard-4.4.4-py3-none-any.whl", hash = "sha256:b5f562281b6bfa1f5492470464730ef001646128b180769880468bd84b68b09e"}, - {file = "typeguard-4.4.4.tar.gz", hash = "sha256:3a7fd2dffb705d4d0efaed4306a704c89b9dee850b688f060a8b1615a79e5f74"}, + {file = "typeguard-4.5.1-py3-none-any.whl", hash = "sha256:44d2bf329d49a244110a090b55f5f91aa82d9a9834ebfd30bcc73651e4a8cc40"}, + {file = "typeguard-4.5.1.tar.gz", hash = "sha256:f6f8ecbbc819c9bc749983cc67c02391e16a9b43b8b27f15dc70ed7c4a007274"}, ] [package.dependencies] @@ -5461,4 +5575,4 @@ vtk = ["pyvista"] [metadata] lock-version = "2.1" python-versions = ">=3.10,<4.0" -content-hash = "6ea2c13ce82481f4777ae85782e2b39bc652f046e03cb6befdfab5dea05f7c00" +content-hash = "3f9741610c29be76cd871df98610c768c51c6ece0df8d8f27ef5cee619fbb6ba" diff --git a/pyproject.toml b/pyproject.toml index b837652..0978b2b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "solvis" -version = "1.3.1" +version = "1.3.2" description = "Analysis of opensha modular solution files." readme = "README.md" license = "AGPL-3.0-or-later" @@ -14,7 +14,7 @@ dependencies = [ "geopandas (>=1.0.1)", "nzshm-common (>=0.8.1)", "nzshm-model (>=0.13.5)", - "pandas (>=2.3.0)", + "pandas (>=2.3.0,<3)", "pyproj (>=3.3)", "python-dateutil (>=2.8.2)", "pytz (>=2025.1)", diff --git a/solvis/__init__.py b/solvis/__init__.py index 245304d..2d062a4 100644 --- a/solvis/__init__.py +++ b/solvis/__init__.py @@ -13,4 +13,4 @@ from . import utils from .solution import CompositeSolution, FaultSystemSolution, InversionSolution -__version__ = '1.3.1' +__version__ = '1.3.2' diff --git a/test/geometry/test_geometry_performance.py b/test/geometry/test_geometry_performance.py index d3b7595..2c0320c 100644 --- a/test/geometry/test_geometry_performance.py +++ b/test/geometry/test_geometry_performance.py @@ -45,7 +45,7 @@ def test_calc_performance_to_a_crustal_fault_section(self): ) / 10 ) - assert elapsed < 0.1 # 100msec + assert elapsed < 0.2 # 200msec @pytest.mark.performance def test_calc_peformance_to_a_subduction_fault_section(self): @@ -77,4 +77,4 @@ def test_calc_peformance_to_a_subduction_fault_section(self): ) / 10 ) - assert elapsed < 0.5 # 500msec + assert elapsed < 0.6 # 600msec