Fixing failing executables

[pedrolimasi]

Scripts to be fixed

• ellipse_TI_elasticity.py #9
• Ex2_height_contained_CPC.py
• radial_viscosity_explicit.py
• height_contained_mesh_extension.py
• Radial_MtoKtilde_Closure.py #10
• CSIRO_block4_experiment.py
• toughness_anisotropy_jump.py #21
• Ex1_radial_MtoKtilde_CPC.py
• Experiment_Wu_et_al.py
• radial_MtoKtilde_phi_1e-2.py
• radial_pulse_toughness_arrest.py #17
• radial_pulse_leakoff_arrest.py
• pre_existing_fracture.py
• dyke_spreading_mesh_extension.py
• buoyancy_line_source.py
• slamback_and_rebound.py #20
• Ex4_fracture_closure_CPC.py
• radial_K_symmetric.py
• stress_heterogeneities.py #12
• ellipse_Anisotropic_toughness.py
• radial_viscosity_pulse.py
• radial_MtoMtilde.py
• Ex3_dyke_spreading_CPC.py #18
• radial_MtoK.py

Context

This list contains executable examples which should run till the end of simulation, but may be raising an exception or failing.

Once I complete fixing this, it will not necessarily imply all examples work. For that we'll have to analyze results a little more carefully.

[Skonki]

I propose to take care of the following issues:

Radial_MtoKtilde_Closure.py
radial_pulse_toughness_arrest.py
Ex3_dyke_spreading_CPC.py

[pedrolimasi]

Perfect. I am now working on anything related to TI kernel.

[Skonki]

@pedrolimasi @carloperuzzo

Let's see to merge the pull requests and then re-run all examples to see what still fails.

Some issues might have been solved in the meantime by the fixes to others.

[pedrolimasi]

I'm still figuring out what is the issue in #20, but clearly it was not fixed by the recent PRs. So I'll let gelpc1 run through all the examples in the mean time, and I'll update the status here in a few hours.

[pedrolimasi]

Ankit was using gelpc1 and the batch script was very slow.
He has now interrupted his script to give us room.
Only 4 examples so far. I'll check/uncheck any example that differ from the current list.

[pedrolimasi]

The last few commits fixed ellipse_Anisotropic_toughness.py as well 😃

[Skonki]

Nice, this is what I hoped for^^

I will take a look at slamback and rebound tonight/early tomorrow morning.

Let's hope for @carloperuzzo to finish all of this ;)

Best and thanks a bunch again @pedrolimasi

[carloperuzzo]

Nice!
Thanks a lot @pedrolimasi

[Skonki]

@pedrolimasi I ran slamback and rebound. No issues for me except that I think it's not doing what it is supposed to do (@carloperuzzo we will check these things in the next round).

Checking atm if this is related to an old matplotlib installation of mine.

[Skonki]

In addition to the previous comment, I use python3.9 with Matplotlib 3.8.2 (updated).

But I ran it in Pycharm, I will try to see if, when running from Consol, I also get the error. Because so far I get a warning but the code does not crash.

[pedrolimasi]

I had a batch run to confirm the fix.
Weirdly,

• radial_K_symmetric.py
• stress_heterogeneities.py
• toughness_anisotropy_jump.py

did not work.

Even though they ran fine on debug mode separately.
I'll check on it later. Hopefully is an easy fix.