Hi, I am trying to run:
cago_metadata <- read.csv(file = "sample_data.csv", sep = ";", header = T)
cago_metadata_dt <- as.data.table(cago_metadata)
ZR1 <- as.data.table("ZR-1.bracken")
ZR-1 <- bracken_to_phyloseq(ZR1, metadata = cago_metadata,id_col = "Name")
But I keep getting Error in value_vars(value.var, names(data)) : value.var values [reads] are not found in 'data'. as an error.
I'm attaching the two files here if you could help. Thank you!
issue data.zip