diff --git a/man/run_hisat2.Rd b/man/run_hisat2.Rd index 031d1d8..0cb5765 100755 --- a/man/run_hisat2.Rd +++ b/man/run_hisat2.Rd @@ -74,8 +74,7 @@ Runs the HISAT2 tool, can be used for single end and paired end reads pattern = "*_R1_001.fastq$", full.names = FALSE),"_"), `[[`, 1)) - index <- "/export/buzz1/Genome/Homo_sapiens/Ensembl/GRCH38_p7/Sequence/Transcriptome/ - KallistoIndex/GRCh38_p7.kall" + index <- "/export/buzz1/Genome/Homo_sapiens/Ensembl/GRCh38.102/indexes/hisat2/Homo_sapiens.GRCh38" # Paired End example strandedness <- "RF"