This repository was archived by the owner on Jul 22, 2024. It is now read-only.
This repository was archived by the owner on Jul 22, 2024. It is now read-only.
mpi4py support #267
Description
Hello,
I support an IBM AC922 system with InfiniBand, Spectrum MPI, and the xl compiler. We rely on PowerAI for delivering customizable python environments backed by an ecosystem of pre-tuned machine learning packages. We were recently asked to support mpi4py and I have been unable to compile it in a conda environment. It will compile with the system python, so xl and spectrum seem to be configured fine - issues only arise in a conda environment. I'd appreciate any help.
Thanks,
Greg
$ conda config --show
add_anaconda_token: True
add_pip_as_python_dependency: True
aggressive_update_packages:
- ca-certificates
- certifi
- openssl
allow_conda_downgrades: False
allow_cycles: True
allow_non_channel_urls: False
allow_softlinks: False
always_copy: False
always_softlink: False
always_yes: None
anaconda_upload: None
auto_activate_base: True
auto_stack: 0
auto_update_conda: False
bld_path:
changeps1: True
channel_alias: https://conda.anaconda.org
channel_priority: strict
channels:
- https://public.dhe.ibm.com/ibmdl/export/pub/software/server/ibm-ai/conda/
- defaults
client_ssl_cert: None
client_ssl_cert_key: None
clobber: False
conda_build: {}
create_default_packages: []
croot: /home/03076/gzynda/conda-bld
custom_channels:
pkgs/main: https://repo.anaconda.com
pkgs/r: https://repo.anaconda.com
pkgs/pro: https://repo.anaconda.com
custom_multichannels:
defaults:
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
local:
debug: False
default_channels:
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
default_python: 3.7
default_threads: 4
deps_modifier: not_set
dev: False
disallowed_packages: []
download_only: False
dry_run: False
enable_private_envs: False
env_prompt: ({default_env})
envs_dirs:
- /scratch/03076/gzynda/conda_local/envs
- /scratch/apps/conda/4.8.3/envs
- /home/03076/gzynda/.conda/envs
error_upload_url: https://conda.io/conda-post/unexpected-error
execute_threads: 4
extra_safety_checks: False
force: False
force_32bit: False
force_reinstall: False
force_remove: False
ignore_pinned: False
json: False
local_repodata_ttl: 1
migrated_channel_aliases: []
migrated_custom_channels: {}
non_admin_enabled: True
notify_outdated_conda: True
offline: False
override_channels_enabled: True
path_conflict: clobber
pinned_packages: []
pip_interop_enabled: False
pkgs_dirs:
- /scratch/03076/gzynda/conda_local/pkgs
- /scratch/apps/conda/4.8.3/pkgs
proxy_servers: {}
quiet: False
remote_backoff_factor: 1
remote_connect_timeout_secs: 9.15
remote_max_retries: 3
remote_read_timeout_secs: 60.0
repodata_fns:
- current_repodata.json
- repodata.json
repodata_threads: 4
report_errors: None
restore_free_channel: False
rollback_enabled: True
root_prefix: /scratch/apps/conda/4.8.3
safety_checks: warn
sat_solver: pycosat
separate_format_cache: False
shortcuts: True
show_channel_urls: None
solver_ignore_timestamps: False
ssl_verify: True
subdir: linux-ppc64le
subdirs:
- linux-ppc64le
- noarch
target_prefix_override:
track_features: []
unsatisfiable_hints: True
unsatisfiable_hints_check_depth: 2
update_modifier: update_specs
use_index_cache: False
use_local: False
use_only_tar_bz2: False
verbosity: 0
verify_threads: 4
whitelist_channels: []
$ conda create -n pai17 python=3 powerai=1.7
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /scratch/03076/gzynda/conda_local/envs/pai17
added / updated specs:
- powerai=1.7
- python=3
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-ppc64le::_libgcc_mutex-0.1-main
_py-xgboost-mutex ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::_py-xgboost-mutex-1.0-gpu_645.ge505a9a
_pytorch_select ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::_pytorch_select-2.0-gpu_21940.g1a3a219
_tflow_select ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::_tflow_select-2.1.0-gpu_929.g59c9804
absl-py pkgs/main/linux-ppc64le::absl-py-0.8.1-py37_0
apex ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::apex-0.1.0_1.7.0-py37_662.gb1ba068
astor pkgs/main/linux-ppc64le::astor-0.8.0-py37_0
atomicwrites pkgs/main/noarch::atomicwrites-1.4.0-py_0
attrs pkgs/main/noarch::attrs-19.3.0-py_0
blas pkgs/main/linux-ppc64le::blas-1.0-openblas
bokeh pkgs/main/linux-ppc64le::bokeh-1.4.0-py37_0
boost pkgs/main/linux-ppc64le::boost-1.67.0-py37_4
brotlipy pkgs/main/linux-ppc64le::brotlipy-0.7.0-py37h7b6447c_1000
bzip2 pkgs/main/linux-ppc64le::bzip2-1.0.8-h7b6447c_0
c-ares pkgs/main/linux-ppc64le::c-ares-1.15.0-h7b6447c_1001
ca-certificates pkgs/main/linux-ppc64le::ca-certificates-2020.6.24-0
caffe ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::caffe-1.0_1.7.0-5247.g03f78fb
caffe-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::caffe-base-1.0_1.7.0-gpu_py37_5247.g03f78fb
cairo pkgs/main/linux-ppc64le::cairo-1.14.12-h8948797_3
certifi pkgs/main/linux-ppc64le::certifi-2020.6.20-py37_0
cffi pkgs/main/linux-ppc64le::cffi-1.12.3-py37h2e261b9_0
chardet pkgs/main/linux-ppc64le::chardet-3.0.4-py37_1003
click pkgs/main/linux-ppc64le::click-7.0-py37_0
cloudpickle pkgs/main/noarch::cloudpickle-1.2.2-py_0
coverage pkgs/main/linux-ppc64le::coverage-4.5.4-py37h7b6447c_0
cryptography pkgs/main/linux-ppc64le::cryptography-2.9.2-py37h1ba5d50_0
cudatoolkit ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::cudatoolkit-10.2.89-680.g0f7a43a
cudnn ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::cudnn-7.6.5_10.2-650.g338a052
cxxfilt ibmdl/export/pub/software/server/ibm-ai/conda/noarch::cxxfilt-0.2.0-py_622.gbc2955e
cycler pkgs/main/linux-ppc64le::cycler-0.10.0-py37_0
cytoolz pkgs/main/linux-ppc64le::cytoolz-0.10.1-py37h7b6447c_0
dask pkgs/main/noarch::dask-2.9.2-py_0
dask-core pkgs/main/noarch::dask-core-2.9.2-py_0
dask-cuda ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::dask-cuda-0.11.0-py37_630.g2290d8e
dask-xgboost ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::dask-xgboost-0.1.9-py37_647.g2eb49b6
ddl ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::ddl-1.5.1-py37_1364.ged89432
ddl-tensorflow ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::ddl-tensorflow-1.5.1-py37_1073.g105e407
decorator pkgs/main/noarch::decorator-4.4.2-py_0
distributed pkgs/main/noarch::distributed-2.9.3-py_0
ffmpeg pkgs/main/linux-ppc64le::ffmpeg-4.2.2-h20bf706_0
fontconfig pkgs/main/linux-ppc64le::fontconfig-2.13.0-h9420a91_0
freeglut pkgs/main/linux-ppc64le::freeglut-3.0.0-hf484d3e_5
freetype pkgs/main/linux-ppc64le::freetype-2.9.1-h8a8886c_0
fsspec pkgs/main/noarch::fsspec-0.7.4-py_0
future pkgs/main/linux-ppc64le::future-0.17.1-py37_0
gast pkgs/main/linux-ppc64le::gast-0.2.2-py37_0
gflags ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::gflags-2.2.2-1679.g1bcb8ab
giflib pkgs/main/linux-ppc64le::giflib-5.1.4-h14c3975_1
glib pkgs/main/linux-ppc64le::glib-2.63.1-h5a9c865_0
glog ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::glog-0.3.5-1668.g110e904
gmp pkgs/main/linux-ppc64le::gmp-6.1.2-h7f7056e_2
gnutls pkgs/main/linux-ppc64le::gnutls-3.6.5-h71b1129_1002
google-pasta ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::google-pasta-0.1.8-py37_622.gd00f35a
graphite2 pkgs/main/linux-ppc64le::graphite2-1.3.14-h23475e2_0
graphsurgeon ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::graphsurgeon-0.4.1-py37_697.g9922bde
grpcio pkgs/main/linux-ppc64le::grpcio-1.16.1-py37hf8bcb03_1
h5py pkgs/main/linux-ppc64le::h5py-2.8.0-py37h8d01980_0
harfbuzz pkgs/main/linux-ppc64le::harfbuzz-1.8.8-hffaf4a1_0
hdf5 pkgs/main/linux-ppc64le::hdf5-1.10.2-hba1933b_1
heapdict pkgs/main/noarch::heapdict-1.0.1-py_0
horovod ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::horovod-0.19.0-py37_1105.g5e1e5d1
hypothesis pkgs/main/linux-ppc64le::hypothesis-3.59.1-py37h39e3cac_0
icu pkgs/main/linux-ppc64le::icu-58.2-he6710b0_3
idna pkgs/main/linux-ppc64le::idna-2.8-py37_0
imageio pkgs/main/noarch::imageio-2.9.0-py_0
importlib-metadata pkgs/main/linux-ppc64le::importlib-metadata-1.7.0-py37_0
importlib_metadata pkgs/main/noarch::importlib_metadata-1.7.0-0
jasper pkgs/main/linux-ppc64le::jasper-2.0.14-h07fcdf6_1
jinja2 pkgs/main/noarch::jinja2-2.11.2-py_0
joblib pkgs/main/linux-ppc64le::joblib-0.13.2-py37_0
jpeg pkgs/main/linux-ppc64le::jpeg-9b-hcb7ba68_2
keras-applications pkgs/main/noarch::keras-applications-1.0.8-py_1
keras-preprocessi~ pkgs/main/noarch::keras-preprocessing-1.1.0-py_1
kiwisolver pkgs/main/linux-ppc64le::kiwisolver-1.2.0-py37hfd86e86_0
lame pkgs/main/linux-ppc64le::lame-3.100-h7b6447c_0
ld_impl_linux-ppc~ pkgs/main/linux-ppc64le::ld_impl_linux-ppc64le-2.33.1-h0f24833_7
leveldb pkgs/main/linux-ppc64le::leveldb-1.20-hf484d3e_1
libboost pkgs/main/linux-ppc64le::libboost-1.67.0-h46d08c1_4
libedit pkgs/main/linux-ppc64le::libedit-3.1.20191231-h14c3975_1
libffi pkgs/main/linux-ppc64le::libffi-3.2.1-hf62a594_5
libgcc-ng pkgs/main/linux-ppc64le::libgcc-ng-8.2.0-h822a55f_1
libgfortran-ng pkgs/main/linux-ppc64le::libgfortran-ng-7.3.0-h822a55f_1
libglu pkgs/main/linux-ppc64le::libglu-9.0.0-hf484d3e_1
libopenblas pkgs/main/linux-ppc64le::libopenblas-0.3.6-h5a2b251_1
libopencv ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::libopencv-3.4.8-py37_784.g5a642ca
libopus pkgs/main/linux-ppc64le::libopus-1.3.1-h7b6447c_0
libpng pkgs/main/linux-ppc64le::libpng-1.6.36-hbc83047_0
libprotobuf ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::libprotobuf-3.8.0-634.g08dc819
libstdcxx-ng pkgs/main/linux-ppc64le::libstdcxx-ng-8.2.0-h822a55f_1
libtiff pkgs/main/linux-ppc64le::libtiff-4.1.0-h2733197_1
libuuid pkgs/main/linux-ppc64le::libuuid-1.0.3-h1bed415_2
libvpx pkgs/main/linux-ppc64le::libvpx-1.7.0-hf484d3e_0
libwebp pkgs/main/linux-ppc64le::libwebp-1.0.1-h8e7db2f_0
libxcb pkgs/main/linux-ppc64le::libxcb-1.14-h7b6447c_0
libxgboost-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::libxgboost-base-0.90-gpu_645.ge505a9a
libxml2 pkgs/main/linux-ppc64le::libxml2-2.9.10-he19cac6_1
llvmlite pkgs/main/linux-ppc64le::llvmlite-0.31.0-py37hd408876_0
lmdb pkgs/main/linux-ppc64le::lmdb-0.9.22-hf484d3e_1
locket pkgs/main/linux-ppc64le::locket-0.2.0-py37_1
lz4-c pkgs/main/linux-ppc64le::lz4-c-1.9.2-he6710b0_0
markdown pkgs/main/linux-ppc64le::markdown-3.1.1-py37_0
markupsafe pkgs/main/linux-ppc64le::markupsafe-1.1.1-py37h7b6447c_0
matplotlib pkgs/main/linux-ppc64le::matplotlib-3.0.3-py37h5429711_0
mock pkgs/main/linux-ppc64le::mock-3.0.5-py37_0
more-itertools pkgs/main/noarch::more-itertools-8.4.0-py_0
msgpack-python pkgs/main/linux-ppc64le::msgpack-python-1.0.0-py37hfd86e86_1
nccl ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::nccl-2.5.6-645.g51c2e94
ncurses pkgs/main/linux-ppc64le::ncurses-6.2-he6710b0_1
nettle pkgs/main/linux-ppc64le::nettle-3.4.1-hbb512f6_0
networkx pkgs/main/noarch::networkx-2.3-py_0
ninja pkgs/main/linux-ppc64le::ninja-1.9.0-py37hfd86e86_0
nomkl pkgs/main/linux-ppc64le::nomkl-3.0-0
numactl ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::numactl-2.0.12-628.gb5e1afd
numba pkgs/main/linux-ppc64le::numba-0.47.0-py37h962f231_0
numpy pkgs/main/linux-ppc64le::numpy-1.17.4-py37hd5be1e1_0
numpy-base pkgs/main/linux-ppc64le::numpy-base-1.17.4-py37h2f8d375_0
olefile pkgs/main/linux-ppc64le::olefile-0.46-py37_0
onnx ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::onnx-1.6.0-py37_671.g75d3229
openblas pkgs/main/linux-ppc64le::openblas-0.3.6-1
openblas-devel pkgs/main/linux-ppc64le::openblas-devel-0.3.6-1
opencv ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::opencv-3.4.8-py37_784.g5a642ca
openh264 pkgs/main/linux-ppc64le::openh264-2.1.0-hd408876_0
openssl pkgs/main/linux-ppc64le::openssl-1.1.1g-h7b6447c_0
opt_einsum pkgs/main/noarch::opt_einsum-3.1.0-py_0
packaging pkgs/main/noarch::packaging-20.4-py_0
pai4sk ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pai4sk-1.6.0-py37_1156.g99299fc
pandas pkgs/main/linux-ppc64le::pandas-1.0.5-py37h0573a6f_0
partd pkgs/main/noarch::partd-1.1.0-py_0
pciutils ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pciutils-3.6.2-627.g804ec60
pcre pkgs/main/linux-ppc64le::pcre-8.44-he6710b0_0
pillow pkgs/main/linux-ppc64le::pillow-7.1.2-py37haac5956_0
pip pkgs/main/linux-ppc64le::pip-20.1.1-py37_1
pixman pkgs/main/linux-ppc64le::pixman-0.40.0-h7b6447c_0
pluggy pkgs/main/linux-ppc64le::pluggy-0.13.1-py37_0
powerai ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-1.7.0-679.g5b5a006
powerai-license ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-license-1.7.0-778.g91a0fd9
powerai-release ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-release-1.7.0-627.g1c389a2
powerai-tools ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-tools-1.7.0-623.g843ad38
protobuf ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::protobuf-3.8.0-py37_642.gdc7b773
psutil pkgs/main/linux-ppc64le::psutil-5.6.7-py37h7b6447c_0
py pkgs/main/noarch::py-1.9.0-py_0
py-boost pkgs/main/linux-ppc64le::py-boost-1.67.0-py37h04863e7_4
py-opencv ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::py-opencv-3.4.8-py37_784.g5a642ca
py-xgboost-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::py-xgboost-base-0.90-gpu_py37_645.ge505a9a
py-xgboost-gpu ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::py-xgboost-gpu-0.90-645.ge505a9a
pycparser pkgs/main/noarch::pycparser-2.20-py_2
pynvml ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pynvml-8.0.3-py37_618.g443d2aa
pyopenssl pkgs/main/noarch::pyopenssl-19.1.0-py_1
pyparsing pkgs/main/noarch::pyparsing-2.4.7-py_0
pysocks pkgs/main/linux-ppc64le::pysocks-1.7.1-py37_1
pytest pkgs/main/linux-ppc64le::pytest-4.4.2-py37_0
python pkgs/main/linux-ppc64le::python-3.7.7-ha29dc6b_0_cpython
python-dateutil pkgs/main/noarch::python-dateutil-2.8.1-py_0
python-lmdb pkgs/main/linux-ppc64le::python-lmdb-0.98-py37he6710b0_0
pytorch ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pytorch-1.3.1-21940.g1a3a219
pytorch-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pytorch-base-1.3.1-gpu_py37_21940.g1a3a219
pytz pkgs/main/noarch::pytz-2020.1-py_0
pywavelets pkgs/main/linux-ppc64le::pywavelets-1.1.1-py37h7b6447c_0
pyyaml pkgs/main/linux-ppc64le::pyyaml-5.3.1-py37h7b6447c_1
readline pkgs/main/linux-ppc64le::readline-8.0-h7b6447c_0
requests pkgs/main/linux-ppc64le::requests-2.22.0-py37_1
scikit-image pkgs/main/linux-ppc64le::scikit-image-0.15.0-py37he6710b0_0
scikit-learn pkgs/main/linux-ppc64le::scikit-learn-0.22.1-py37h22eb022_0
scipy pkgs/main/linux-ppc64le::scipy-1.3.1-py37he2b7bc3_0
setuptools pkgs/main/linux-ppc64le::setuptools-49.2.0-py37_0
simsearch ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::simsearch-1.6.0-py37_882.ga3f4a67
six pkgs/main/linux-ppc64le::six-1.13.0-py37_0
snapml-spark ibmdl/export/pub/software/server/ibm-ai/conda/noarch::snapml-spark-1.6.0-py_1020.gc01d7a8
snappy pkgs/main/linux-ppc64le::snappy-1.1.7-h1532aa0_3
sortedcontainers pkgs/main/noarch::sortedcontainers-2.2.2-py_0
spectrum-mpi ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::spectrum-mpi-10.03-678.ga72dafb
sqlite pkgs/main/linux-ppc64le::sqlite-3.32.3-hbc83047_0
tabulate pkgs/main/linux-ppc64le::tabulate-0.8.2-py37_0
tbb pkgs/main/linux-ppc64le::tbb-2020.0-hfd86e86_0
tblib pkgs/main/noarch::tblib-1.6.0-py_0
tensorboard ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorboard-2.1.0-py37_3dc74fe_3959.g2372771
tensorflow ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-2.1.1-gpu_py37_934.g2372771
tensorflow-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-base-2.1.1-gpu_py37_3ffdb91_72692.g44a6283
tensorflow-benchm~ ibmdl/export/pub/software/server/ibm-ai/conda/noarch::tensorflow-benchmarks-0.1-gpu_py_627.gb971bf9
tensorflow-estima~ ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-estimator-2.1.0-py37_7ec4e5d_1477.g59c9804
tensorflow-gpu ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-gpu-2.1.1-934.g2372771
tensorflow-probab~ ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-probability-0.9.0-py37_356cfdd_3242.g59c9804
tensorflow-servin~ ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-serving-api-2.1.0-py37_d83512c_5308.gf3d82d3
tensorrt ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorrt-7.0.0.11-py37_697.g9922bde
termcolor pkgs/main/linux-ppc64le::termcolor-1.1.0-py37_1
tk pkgs/main/linux-ppc64le::tk-8.6.10-hbc83047_0
toolz pkgs/main/noarch::toolz-0.10.0-py_0
torchtext ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::torchtext-0.4.0-py37_633.g16a90d7
torchvision-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::torchvision-base-0.4.2-gpu_py37_661.g37d5d4d
tornado pkgs/main/linux-ppc64le::tornado-6.0.4-py37h7b6447c_1
tqdm pkgs/main/noarch::tqdm-4.36.1-py_0
typing pkgs/main/linux-ppc64le::typing-3.6.4-py37_0
uff ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::uff-0.6.5-py37_697.g9922bde
urllib3 pkgs/main/noarch::urllib3-1.25.9-py_0
werkzeug pkgs/main/noarch::werkzeug-0.16.0-py_0
wheel pkgs/main/linux-ppc64le::wheel-0.34.2-py37_0
wrapt pkgs/main/linux-ppc64le::wrapt-1.11.2-py37h7b6447c_0
x264 pkgs/main/linux-ppc64le::x264-1!157.20191217-h7b6447c_0
xz pkgs/main/linux-ppc64le::xz-5.2.5-h7b6447c_0
yaml pkgs/main/linux-ppc64le::yaml-0.2.5-h7b6447c_0
zict pkgs/main/noarch::zict-2.0.0-py_0
zipp pkgs/main/noarch::zipp-3.1.0-py_0
zlib pkgs/main/linux-ppc64le::zlib-1.2.11-h7b6447c_3
zstd pkgs/main/linux-ppc64le::zstd-1.4.5-h0b5b093_0
Proceed ([y]/n)? y
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate pai17
#
# To deactivate an active environment, use
#
# $ conda deactivate
$ conda activate pai17
(pai17) $ pip install mpi4py
Collecting mpi4py
Using cached mpi4py-3.0.3.tar.gz (1.4 MB)
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /scratch/03076/gzynda/conda_local/envs/pai17/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tjsbidsb
cwd: /tmp/pip-install-j_4pv84w/mpi4py/
Complete output (134 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-ppc64le-3.7
creating build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py
creating build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.7/mpi4py
creating build/lib.linux-ppc64le-3.7/mpi4py/include
creating build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc
MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx
MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort
MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90
MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77
checking for library 'lmpe' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-ppc64le-3.7
creating build/temp.linux-ppc64le-3.7/src
creating build/temp.linux-ppc64le-3.7/src/lib-pmpi
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/mpe.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "mpe" failed
checking for library 'vt-mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt" failed
checking for library 'vt-mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-mpi.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-mpi" failed
checking for library 'vt-hyb' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-hyb.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-hyb" failed
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc
MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx
MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort
MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90
MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c src/dynload.c -o build/temp.linux-ppc64le-3.7/src/dynload.o
gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.7/src/dynload.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o build/lib.linux-ppc64le-3.7/mpi4py/dl.cpython-37m-powerpc64le-linux-gnu.so
checking for MPI compile and link ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Failed building wheel for mpi4py
Running setup.py clean for mpi4py
Failed to build mpi4py
Installing collected packages: mpi4py
Running setup.py install for mpi4py ... error
ERROR: Command errored out with exit status 1:
command: /scratch/03076/gzynda/conda_local/envs/pai17/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-2c9mz01o/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m/mpi4py
cwd: /tmp/pip-install-j_4pv84w/mpi4py/
Complete output (134 lines):
running install
running build
running build_src
running build_py
creating build
creating build/lib.linux-ppc64le-3.7
creating build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py
creating build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures
copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.7/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.7/mpi4py
creating build/lib.linux-ppc64le-3.7/mpi4py/include
creating build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc
MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx
MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort
MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90
MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77
checking for library 'lmpe' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-ppc64le-3.7
creating build/temp.linux-ppc64le-3.7/src
creating build/temp.linux-ppc64le-3.7/src/lib-pmpi
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/mpe.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "mpe" failed
checking for library 'vt-mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt" failed
checking for library 'vt-mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-mpi.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-mpi" failed
checking for library 'vt-hyb' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-hyb.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-hyb" failed
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc
MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx
MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort
MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90
MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c src/dynload.c -o build/temp.linux-ppc64le-3.7/src/dynload.o
gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.7/src/dynload.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o build/lib.linux-ppc64le-3.7/mpi4py/dl.cpython-37m-powerpc64le-linux-gnu.so
checking for MPI compile and link ...
/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Command errored out with exit status 1: /scratch/03076/gzynda/conda_local/envs/pai17/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-2c9mz01o/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m/mpi4py Check the logs for full command output.
Compiling it using the system spectrum MPI in a new python3 environment with only setuptools and wheel also fails.
$ conda create -n py3 python=3 setuptools wheel
$ conda activate py3
(py3) $ pip install mpi4py
Collecting mpi4py
Using cached mpi4py-3.0.3.tar.gz (1.4 MB)
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /scratch/03076/gzynda/conda_local/envs/py3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xg6jrxrt
cwd: /tmp/pip-install-v8o084bu/mpi4py/
Complete output (134 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-ppc64le-3.8
creating build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py
creating build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.8/mpi4py
creating build/lib.linux-ppc64le-3.8/mpi4py/include
creating build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc
MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx
MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort
MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90
MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77
checking for library 'lmpe' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-ppc64le-3.8
creating build/temp.linux-ppc64le-3.8/src
creating build/temp.linux-ppc64le-3.8/src/lib-pmpi
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/mpe.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "mpe" failed
checking for library 'vt-mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt" failed
checking for library 'vt-mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-mpi.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-mpi" failed
checking for library 'vt-hyb' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-hyb.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-hyb" failed
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc
MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx
MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort
MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90
MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c src/dynload.c -o build/temp.linux-ppc64le-3.8/src/dynload.o
gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.8/src/dynload.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o build/lib.linux-ppc64le-3.8/mpi4py/dl.cpython-38-powerpc64le-linux-gnu.so
checking for MPI compile and link ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Failed building wheel for mpi4py
Running setup.py clean for mpi4py
Failed to build mpi4py
Installing collected packages: mpi4py
Running setup.py install for mpi4py ... error
ERROR: Command errored out with exit status 1:
command: /scratch/03076/gzynda/conda_local/envs/py3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-p8_jcrcb/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/py3/include/python3.8/mpi4py
cwd: /tmp/pip-install-v8o084bu/mpi4py/
Complete output (134 lines):
running install
running build
running build_src
running build_py
creating build
creating build/lib.linux-ppc64le-3.8
creating build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py
creating build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures
copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.8/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.8/mpi4py
creating build/lib.linux-ppc64le-3.8/mpi4py/include
creating build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc
MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx
MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort
MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90
MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77
checking for library 'lmpe' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-ppc64le-3.8
creating build/temp.linux-ppc64le-3.8/src
creating build/temp.linux-ppc64le-3.8/src/lib-pmpi
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/mpe.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "mpe" failed
checking for library 'vt-mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt" failed
checking for library 'vt-mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-mpi.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-mpi" failed
checking for library 'vt-hyb' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-hyb.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255
warning: build_clib: building optional library "vt-hyb" failed
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc
MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx
MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort
MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90
MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c src/dynload.c -o build/temp.linux-ppc64le-3.8/src/dynload.o
gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.8/src/dynload.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o build/lib.linux-ppc64le-3.8/mpi4py/dl.cpython-38-powerpc64le-linux-gnu.so
checking for MPI compile and link ...
/opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o
/opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Command errored out with exit status 1: /scratch/03076/gzynda/conda_local/envs/py3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-p8_jcrcb/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/py3/include/python3.8/mpi4py Check the logs for full command output.