[UI] GWAS Association Tables #52
Description
Name of page? (required)
Variant
Name of table? (required)
GWAS Associations
Here is my overall feedback for the GWAS associations table in the variant page
- I am a little bit confused because the example table in the documentation at https://docs.catalog.igvf.org/nodes/variant has only 4 columns, yet the "real" GWAS table documentation seems to have many more columns which are all very useful.
- When I search a sample variant (e.g. rs7412 at https://catalog-dev.igvf.org/rs7412?sub=d462ec1e074aa763c951c92c1edacb5cfb6a86f86c6c9e31ccb74f024477ef4b#section-3, most of the study IDs are from the GWAS Catalog, but some are not. How can the non GWAS Catalog study IDs be used? They don't seem to be searchable in the Catalog, and they do not have PMIDs associated (I assume because information was populated from the GWAS catalog).
- It might be useful to include the effect/risk allele explicitly as the GWAS catalog does, although probably not strictly necessary given other information in the Catalog perhaps.
- Although this is somewhat unrelated, I noticed that there are duplicate entries in the Catalog search function for the ontology term "apolipoprotein b measurement". I found this trying to mimic the behavior of a user: find the most significantly associated term by sorting the GWAS table based on lead p-value and browse the catalog for it.