diff --git a/tests/convert/test_isatab2sra.py b/tests/convert/test_isatab2sra.py index 1e03e019..0546fcba 100644 --- a/tests/convert/test_isatab2sra.py +++ b/tests/convert/test_isatab2sra.py @@ -114,7 +114,6 @@ def test_isatab2sra_dump_submission_xml_biis7(self): actual_submission_xml_biis7 = etree.fromstring(submission_xml) self.assertTrue(utils.assert_xml_equal(self._expected_submission_xml_biis7, actual_submission_xml_biis7)) - # @unittest.skip("Not working yet") def test_isatab2sra_dump_project_set_xml_biis7(self): isatab2sra.convert(self._biis7_dir, self._tmp_dir, validate_first=False) with open(os.path.join(self._tmp_dir, "project_set.xml"), "rb") as ps_fp: diff --git a/tests/convert/test_sampletab2isatab.py b/tests/convert/test_sampletab2isatab.py index 31fd371f..daf5aeba 100644 --- a/tests/convert/test_sampletab2isatab.py +++ b/tests/convert/test_sampletab2isatab.py @@ -6,8 +6,6 @@ from isatools.convert import sampletab2isatab from isatools.tests import utils -SLOW_TESTS = int(os.getenv("SLOW_TESTS", "0")) - def setUpModule(): if not os.path.exists(utils.DATA_DIR): @@ -35,17 +33,16 @@ def test_sampletab2isatab_test_2(self): with open(os.path.join(self._sampletab_dir, "test2.txt")) as sampletab_fp: sampletab2isatab.convert(source_sampletab_fp=sampletab_fp, target_dir=self._tmp_dir) - @unittest.skipIf(not SLOW_TESTS, "slow") + @unittest.skip("deprecated method pending deletion") def test_sampletab2isatab_GSB_3(self): with open(os.path.join(self._sampletab_dir, "GSB-3.txt")) as sampletab_fp: sampletab2isatab.convert(source_sampletab_fp=sampletab_fp, target_dir=self._tmp_dir) - @unittest.skipIf(not SLOW_TESTS, "slow") + @unittest.skip("deprecated method pending deletion") def test_sampletab2isatab_GSB_537(self): with open(os.path.join(self._sampletab_dir, "GSB-537.txt")) as sampletab_fp: sampletab2isatab.convert(source_sampletab_fp=sampletab_fp, target_dir=self._tmp_dir) - @unittest.skip("slow") def test_sampletab2isatab_GSB_718(self): with open(os.path.join(self._sampletab_dir, "GSB-718.txt")) as sampletab_fp: sampletab2isatab.convert(source_sampletab_fp=sampletab_fp, target_dir=self._tmp_dir) diff --git a/uv.lock b/uv.lock index 20397fbd..e51493ac 100644 --- a/uv.lock +++ b/uv.lock @@ -2675,11 +2675,11 @@ wheels = [ [[package]] name = "setuptools" -version = "80.9.0" +version = "80.4.0" source = { registry = "https://pypi.org/simple" } -sdist = { url = "https://files.pythonhosted.org/packages/18/5d/3bf57dcd21979b887f014ea83c24ae194cfcd12b9e0fda66b957c69d1fca/setuptools-80.9.0.tar.gz", hash = "sha256:f36b47402ecde768dbfafc46e8e4207b4360c654f1f3bb84475f0a28628fb19c", size = 1319958, upload-time = "2025-05-27T00:56:51.443Z" } +sdist = { url = "https://files.pythonhosted.org/packages/95/32/0cc40fe41fd2adb80a2f388987f4f8db3c866c69e33e0b4c8b093fdf700e/setuptools-80.4.0.tar.gz", hash = "sha256:5a78f61820bc088c8e4add52932ae6b8cf423da2aff268c23f813cfbb13b4006", size = 1315008, upload-time = "2025-05-09T20:42:27.972Z" } wheels = [ - { url = "https://files.pythonhosted.org/packages/a3/dc/17031897dae0efacfea57dfd3a82fdd2a2aeb58e0ff71b77b87e44edc772/setuptools-80.9.0-py3-none-any.whl", hash = "sha256:062d34222ad13e0cc312a4c02d73f059e86a4acbfbdea8f8f76b28c99f306922", size = 1201486, upload-time = "2025-05-27T00:56:49.664Z" }, + { url = "https://files.pythonhosted.org/packages/b1/93/dba5ed08c2e31ec7cdc2ce75705a484ef0be1a2fecac8a58272489349de8/setuptools-80.4.0-py3-none-any.whl", hash = "sha256:6cdc8cb9a7d590b237dbe4493614a9b75d0559b888047c1f67d49ba50fc3edb2", size = 1200812, upload-time = "2025-05-09T20:42:25.325Z" }, ] [[package]]