diff --git a/phanta/pipelines.py b/phanta/pipelines.py index 127c0c1..9c79ac9 100644 --- a/phanta/pipelines.py +++ b/phanta/pipelines.py @@ -70,6 +70,28 @@ def detect_reads(input_directory, config_file=None): def assembly_pipeline(reads_class, output_dir, config_file=None, qc_only=False, stringent=False, logger=None, logfile_location=None, logfile_configuration=None): + """_summary_ + + :param reads_class: _description_ + :type reads_class: _type_ + :param output_dir: _description_ + :type output_dir: _type_ + :param config_file: _description_, defaults to None + :type config_file: _type_, optional + :param qc_only: _description_, defaults to False + :type qc_only: bool, optional + :param stringent: _description_, defaults to False + :type stringent: bool, optional + :param logger: _description_, defaults to None + :type logger: _type_, optional + :param logfile_location: _description_, defaults to None + :type logfile_location: _type_, optional + :param logfile_configuration: _description_, defaults to None + :type logfile_configuration: _type_, optional + :raises PipelineError: _description_ + :raises Exception: _description_ + :raises PipelineError: _description_ + """ # Setting logger if None has been passed if logger is None: if logfile_location is None: