NGSeasy Calling issue

[belhocine13]

Hello

I am a beginner in programing
I just installed the tool successfully and I even realize the test and observe the VCF output
But after closing the terminal I wanted to come back and start a to run with my own data and then I receive an error that I do not understand

Calling ngseasy_trimmomatic
/ Bin / bash: ngseasy_trimmomatic: No such file or directory
Calling ngseasy_alignment
/ Bin / bash: ngseasy_alignment: No such file or directory
Calling ngseasy_realn
/ Bin / bash: ngseasy_realn: No such file or directory
Calling ngseasy_bsqr
/ Bin / bash: ngseasy_bsqr: No such file or directory
Calling ngseasy_variant_calling
/ Bin / bash: ngseasy_variant_calling: No such file or directory

can you please Help me

Best

[snewhouse]

Hi @belhocine13

can you let me know what version of Docker you are running, OS you are using (Mac/Linux?) etc and can you reproduce the error and share some screen shots?

in the command line type which ngseasy_trimmomatic and let me know what the ouput is.

Cheers

Steve