Encode Slides #95

	name: CI

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	test:
	runs-on: ubuntu-latest
	# needs: format_and_lint
	strategy:
	matrix:
	python-version: ["3.11", "3.12"]
	extractor: [
	"ctranspath",
	"chief-ctranspath",
	"conch",
	"conch1_5",
	"uni",
	"uni2",
	"dino-bloom",
	"gigapath",
	"h-optimus-0",
	"h-optimus-1",
	"virchow",
	"virchow-full",
	"virchow2",
	"musk",
	"mstar",
	"plip",
	"empty"
	]

	steps:
	- uses: actions/checkout@v4

	- name: Install uv
	uses: astral-sh/setup-uv@v5
	with:
	python-version: ${{ matrix.python-version }}
	enable-cache: true
	cache-dependency-glob: "uv.lock"

	# - name: Set up Python ${{ matrix.python-version }}
	# uses: actions/setup-python@v5
	# with:
	# python-version: ${{ matrix.python-version }}

	- name: Install the project
	run: uv sync --extra all --dev

	- name: Build
	run: uv build

	- name: Run tests for extractor ${{ matrix.extractor }}
	run: timeout 10m uv run pytest -rs tests/test_feature_extractors.py -k "${{ matrix.extractor }}"
	env:
	HF_TOKEN: ${{ secrets.HF_TOKEN }}

	format_and_lint:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: Install the code linting and formatting tool Ruff
	run: pipx install ruff
	- name: Lint code with Ruff
	run: ruff check --output-format=github --target-version=py311
	- name: Check code formatting with Ruff
	run: ruff format --diff --target-version=py311
	# continue-on-error: true

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