From 0169391b2649aa817097d582b7672138c1055145 Mon Sep 17 00:00:00 2001 From: Juan Pablo Date: Wed, 28 May 2025 10:00:17 +0100 Subject: [PATCH 1/2] add extension note --- src/stamp/config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/stamp/config.yaml b/src/stamp/config.yaml index 21ac06b3..7e92027e 100644 --- a/src/stamp/config.yaml +++ b/src/stamp/config.yaml @@ -61,7 +61,7 @@ crossval: # containing the feature file path relative to `feature_dir`. # Patient IDs not present in the clini table # as well as non-existent feature paths - # are ignored. + # are ignored. NOTE: Don't forget to add the .h5 file extension. slide_table: "/path/of/slide.csv" # Name of the column from the clini table to train on. From 858b1c93756f8a27a378ef6c0b91ccb59b05a071 Mon Sep 17 00:00:00 2001 From: Juan Pablo Date: Wed, 28 May 2025 10:06:01 +0100 Subject: [PATCH 2/2] forgot to add it in other fields --- src/stamp/config.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/stamp/config.yaml b/src/stamp/config.yaml index 7e92027e..aef9fefb 100644 --- a/src/stamp/config.yaml +++ b/src/stamp/config.yaml @@ -114,7 +114,7 @@ training: # containing the feature file path relative to `feature_dir`. # Patient IDs not present in the clini table # as well as non-existent feature paths - # are ignored. + # are ignored. NOTE: Don't forget to add the .h5 file extension. slide_table: "/path/of/slide.csv" # Name of the column from the clini table to train on. @@ -155,7 +155,7 @@ deployment: # containing the patient ID (matching those in the `clini_table`), and one # called "FILENAME", containing the feature file path relative to `feature_dir`. # Patient IDs not present in the clini table as well as non-existent feature - # paths are ignored. + # paths are ignored. NOTE: Don't forget to add the .h5 file extension. slide_table: "/path/of/slide.csv" # Name of the column from the clini to compare predictions to.