Hello, I was recently working on some TCGA dataset and found this repo super helpful.
However, I found discrepancy between your dataset and the TCGA/GDC, and think it is important to alert people who is using this dataset. Below is the discrepancy I found so far.
For TCGA-77-7138-01, the variant is WT here, but L858R in the cBioportal.
Please let me know if you need any link to check the discrepancies.
Hello, I was recently working on some TCGA dataset and found this repo super helpful.
However, I found discrepancy between your dataset and the TCGA/GDC, and think it is important to alert people who is using this dataset. Below is the discrepancy I found so far.
For TCGA-77-7138-01, the variant is WT here, but L858R in the cBioportal.
Please let me know if you need any link to check the discrepancies.