From 1940f46a1c766cd1a9dd7dabeb56c78fd1f8ce73 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?C=C3=A9sar=20Miguel=20Valdez=20C=C3=B3rdova?= Date: Thu, 30 Oct 2025 10:43:36 -0600 Subject: [PATCH] Relax package version constraints Changed package version constraints from == to >= in both requirements.txt and settings.ini to allow for more flexible dependency management and easier installation across different environments. --- requirements.txt | 36 ++++++++++++++++++------------------ settings.ini | 4 ++-- 2 files changed, 20 insertions(+), 20 deletions(-) diff --git a/requirements.txt b/requirements.txt index 6366e65..9e69347 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,21 +1,21 @@ -click==8.1.3 -graphtools==1.5.3 -hydra-core==1.3.2 -hyperlib==0.0.6 -mpmath==1.2.1 -networkx==2.8.6 -numpy==1.22.0 -omegaconf==2.3.0 +click>=8.1.3 +graphtools>=1.5.3 +hydra-core>=1.3.2 +hyperlib>=0.0.6 +mpmath>=1.2.1 +networkx>=2.8.6 +numpy>=1.22.0 +omegaconf>=2.3.0 pandas -phate==1.0.10 -PyGSP==0.5.1 -python-dotenv==1.0.0 -s_gd2==1.8.1 -scanpy==1.9.3 -scikit_learn==1.2.2 -scikit_sparse==0.4.8 -scipy==1.9.1 -scprep==1.2.1 -setuptools==65.3.0 +phate>=1.0.10 +PyGSP>=0.5.1 +python-dotenv>=1.0.0 +s_gd2>=1.8.1 +scanpy>=1.9.3 +scikit_learn>=1.2.2 +scikit_sparse>=0.4.8 +scipy>=1.9.1 +scprep>=1.2.1 +setuptools>=65.3.0 POT kneed \ No newline at end of file diff --git a/settings.ini b/settings.ini index 7854d82..85b82c4 100644 --- a/settings.ini +++ b/settings.ini @@ -39,7 +39,7 @@ user = KrishnaswamyLab ### Optional ### # console_scripts = -requirements = graphtools==1.5.3 networkx==2.8.6 numpy==1.23.5 PyGSP==0.5.1 s_gd2==1.8.1 scikit-learn==1.2.2 setuptools scipy kneed -dev_requirements = hydra-core==1.3.2 omegaconf==2.3.0 python-dotenv==1.0.0 phate==1.0.10 scanpy==1.9.3 scprep==1.2.1 POT umap +requirements = graphtools>=1.5.3 networkx>=2.8.6 numpy>=1.23.5 PyGSP>=0.5.1 s_gd2>=1.8.1 scikit-learn>=1.2.2 setuptools scipy kneed +dev_requirements = hydra-core>=1.3.2 omegaconf>=2.3.0 python-dotenv>=1.0.0 phate>=1.0.10 scanpy>=1.9.3 scprep>=1.2.1 POT umap # problem with scikit_sparse==0.4.8 \ No newline at end of file