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Description
I ran: pdb_match_chn.py 1ao7.pdb 1bd2.pdb
I got the following error:
Segmentation fault (core dumped)
Traceback (most recent call last):
File "/home/cbaakman/projects/pdb-matching/pdb_match_chn.py", line 50, in <module>
result = subprocess.check_output(f"pdb-pdbalignscore {pdbFL1} {chainA} {pdbFL2} {chainB}", shell=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/cbaakman/anaconda3/lib/python3.11/subprocess.py", line 466, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/cbaakman/anaconda3/lib/python3.11/subprocess.py", line 571, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command 'pdb-pdbalignscore 1ao7.pdb A 1bd2.pdb A' returned non-zero exit status 139.
The pdb files were downloaded from IMGT, I included them in a zip.
pdb.files.zip
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