(DOCKER) changed dockerfile to use lavavu-osmesa

very simple!

Author: lachlangrose

Dockerfile

@@ -2,16 +2,46 @@ FROM continuumio/miniconda3
 LABEL maintainer="lachlan.grose@monash.edu"
 #This docker image has been adapted from the lavavu dockerfile
 # install things
-RUN apt-get update -qq 
 
-RUN conda install -c conda-forge pip scikit-learn cython numpy pandas scipy pymc3 jupyter -y
+RUN apt-get update -qq && \
+    DEBIAN_FRONTEND=noninteractive apt-get install -yq --no-install-recommends \
+    gcc \
+    libc-dev
+
+RUN conda install -c conda-forge pip scikit-learn cython numpy==1.20.1 pandas scipy pymc3 jupyter pyamg -y
 RUN pip install lavavu-osmesa
 
 ENV NB_USER jovyan
 ENV NB_UID 1000
 ENV HOME /home/${NB_USER}
 
+RUN adduser --disabled-password \
+    --gecos "Default user" \
+    --uid ${NB_UID} \
+    ${NB_USER}
 WORKDIR ${HOME}
 
-RUN mkdir shared_volume
-run mkdir LoopStructural
+USER root
+RUN chown -R ${NB_UID} ${HOME}
+
+
+
+RUN conda install -c conda-forge jupyterlab nodejs -y
+RUN pip install snakeviz
+
+# Add Tini
+ENV TINI_VERSION v0.19.0
+ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /tini
+RUN chmod +x /tini
+ENTRYPOINT ["/tini", "--"]
+
+USER ${NB_USER}
+
+RUN mkdir notebooks
+RUN mkdir LoopStructural
+
+# RUN pip install -e LoopStructural
+CMD ["jupyter", "notebook", "--ip='0.0.0.0'", "--NotebookApp.token=''", "--no-browser" ]
+
+EXPOSE 8050
+EXPOSE 8080:8090

docker-compose.yml

@@ -4,9 +4,11 @@ services:
   structural:
     build: ./
     volumes:
-      - /home/lgrose/dev/python/LoopStructuralApplications/:/home/joyvan/shared_volume loop
-      - ./:/home/joyvan/LoopStructural
+      - /home/lgrose/dev/python/LoopStructural/:/home/jovyan/LoopStructural
+      - /home/lgrose/LoopStructural/:/home/jovyan/notebooks
     ports:
-      - 9888:8888
-    command: tail -F blah
+      - 8888:8888
+      - 8050:8050
+      - 8080-8090:8080-8090
+