Suggestions

[Adoni5]

Looking good!

You can add an example PNG into the Readme like so

Which in markdown is:

# [Alt name](url)
![example cnv plot](https://github.com/Adoni5/cnv_from_bam/blob/10a2b00a8832b46cacbff0e2f775a4f440844da0/example_cnv.png?raw=true)

And the URL can be a relative path to the example image.

You can style the images to remove the spines around the edges (looks nicer IMO), and also the gene name would be helpful!

Summary:

• Example image in README
• Remove spines (if you want to)
• Add gene name
• Remove venv and add .gitignore (see below)

[Adoni5]

Oooh another suggestion - don't include the venv in your repository, it's kinda chonky and will only work on linux.

Remove it from your index and add it into a .gitignore file:
git rm --cached venv/

Example .gitignore:
https://github.com/LooseLab/readfish/blob/main/.gitignore

Most IDE's will ayto generate one that ignores most stuff, and then you can just add custom things to ignore at the end.