Skip to content

Issue in the libraries during running the initial step of tract segmentation #279

@AToub99

Description

@AToub99

I am running the following segment of the code:
"TractSeg -i my/path/my_diffusion_image.nii.gz
-o my/output/directory
--bvals my/other/path/my.bvals
--bvecs yet/another/path/my.bvec
--raw_diffusion_input"
However, I am facing this error:
"INTEL MKL ERROR: dlopen(/Users/aa/opt/anaconda3/lib/libmkl_intel_thread.1.dylib, 0x0009): Library not loaded: '@rpath/libiomp5.dylib'
OMP: Error #15: Initializing libiomp5.dylib, but found libomp.dylib already initialized."

I tried to solve it using different methods published such as "KMP_DUPLICATE_LIB_OK"]="TRUE" and "conda install nomkl --channel conda-forge" but the error persist.

Can please guide on the best way to solve this issue?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions