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Reference-based evaluation doesn't detect query #39

@desmodus1984

Description

@desmodus1984

Hi,

I tried the reference-based evaluation, but it failed

The code

Reference-based only evaluation

inspector.py -c /home/pinn+refs31-scaff/final_assembly.fasta -r emptyfile \
        --ref /home/data/genomes/HydLep.fx.fasta \
        -o Scaff-JC/ -t 64

And the error:

Inspector starting... 13/09/2025 16:39:24
Start Assembly evaluation with contigs: ['home/pinn+refs31-scaff/final_assembly.fasta']
Warning: cannot open input file "emptyfile". Removed from list.
Error: No valida input read file. Abort.

Any reason why it failed?
I used the code as stated on the website.
I was able to use seqkit and head on the final_assembly.fasta file.

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