Hi,
I tried the reference-based evaluation, but it failed
The code
Reference-based only evaluation
inspector.py -c /home/pinn+refs31-scaff/final_assembly.fasta -r emptyfile \
--ref /home/data/genomes/HydLep.fx.fasta \
-o Scaff-JC/ -t 64
And the error:
Inspector starting... 13/09/2025 16:39:24
Start Assembly evaluation with contigs: ['home/pinn+refs31-scaff/final_assembly.fasta']
Warning: cannot open input file "emptyfile". Removed from list.
Error: No valida input read file. Abort.
Any reason why it failed?
I used the code as stated on the website.
I was able to use seqkit and head on the final_assembly.fasta file.
Hi,
I tried the reference-based evaluation, but it failed
The code
Reference-based only evaluation
And the error:
Any reason why it failed?
I used the code as stated on the website.
I was able to use seqkit and head on the final_assembly.fasta file.