timecourseTable crashes, differing row numbers

[cvahlensieck]

Thank you for supplying TCseq!

When running timecourseTable(tca, value = "expression", norm.method = "rpkm", filter = TRUE), I get the following error:

Error in names(x) <- value :
  'names' attribute [53] must be the same length as the vector [1]

When running in FC mode instead, I get the following error:
tca <- timecourseTable(tca, value = "FC", norm.method = "rpkm", filter = TRUE)

Error in data.frame(..., check.names = FALSE) :
  arguments imply differing number of rows: 26596, 0

I am running on R 4.2. Could it be that some dataframe functions changed their behavior so that TCseq might miss some columns, indices, etc.?

[MengjunWu]

Hi,

Did you check if the column names of your count table match the time points in the design table in the TCA object?