diff --git a/README.md b/README.md new file mode 100644 index 0000000..41d63cd --- /dev/null +++ b/README.md @@ -0,0 +1,22 @@ +This is the readme for the model associated with the paper: + +Rubin JE, Shevtsova NA, Ermentrout GB, Smith JC, Rybak IA (2009) +Multiple rhythmic states in a model of the respiratory central pattern generator. *J Neurophysiol* 101:2146-65 + +This model runs under XPP available from +[http://www.math.pitt.edu/~bard/xpp/xpp.html](http://www.math.pitt.edu/~bard/xpp/xpp.html) + +After downloading and extracting the archive the program can be started for example under linux by cd'ing to the new folder and typing +`xppaut rubinetal_resp_cpg.ode` + +Click on Initialconds -> Go + +When complete click on Window/zoom -> (W)indow and then change "X Hi" to 10000 and click OK. Then you should see a graph like: + +![screenshot](./screenshot.jpg) + +which is similar to the first trace in Figure 2A from the paper. + +--- + +2025-06-02: Converted README to Markdown. \ No newline at end of file diff --git a/readme.html b/readme.html deleted file mode 100644 index 6df25bf..0000000 --- a/readme.html +++ /dev/null @@ -1,23 +0,0 @@ -
-This is the readme for the model associated with the paper:
-
-Rubin JE, Shevtsova NA, Ermentrout GB, Smith JC, Rybak IA (2009)
-Multiple rhythmic states in a model of the respiratory central pattern
-generator. J Neurophysiol 101:2146-65
-
-This models runs under XPP available from 
-http://www.math.pitt.edu/~bard/xpp/xpp.html
-
-After downloading and extracting the archive the program can be
-started for example under linux by cd'ing to the new folder and typing
-xppaut rubinetal_resp_cpg.ode
-
-Click on Initialconds -> Go
-
-When complete click on Window/zoom -> (W)indow and then change "X Hi"
-to 10000 and click OK.  Then you should see a graph like:
-
-screenshot
-
-which is similar to the first trace in Figure 2A from the paper.
-