Skip to content

'IndexError: list assignment index out of range' in finalizeprobes.py #15

@MorganeStorey

Description

@MorganeStorey

Hi there,

Thanks a lot for making this tool available to all. I am running into an error when running probedesign.py with the following inputs:

Species: mouse
Output directory: output
Padlock arm length: 15 nt
Space between targets: 10 nt
Target Tm range: 70 to 95 after adjustment
Number of probes per gene: 5
Input file: genelist_3.csv

I get this error after the blast finishes:

<class 'IndexError'>
Traceback (most recent call last):
File "/Users/storey/Desktop/HybISS/probedesign.py", line 55, in
sublist = finalizeprobes.selectprobes(int(designpars[5]), finallist, genepars[2])
File "/Users/storey/Desktop/HybISS/lib/finalizeprobes.py", line 179, in selectprobes
del targets[i][j]
IndexError: list assignment index out of range

Anyone encountered the same issue? Any insight on how to fix it?

Thanks!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions